CB290545

Overview
NameCB290545
Unique NameCB290545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2200 contig Csv1_Contig2200:110..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CATL6_HUMAN (Putative cathepsin L-like protein 6 OS=Homo sapiens GN=CTSLL6 PE=5 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 77/184 (41.85%), Postives = 109/184 (59.24%), Query Frame = 2
Query:  206 IDEHNSE----NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDD--YEDVPLNDE 736
            I++HN E      ++ + +N F D+TNEE+R +  G ++       K ++  ++  R+   +P SVDWR+KG +  VKDQG CGSCWAFS   A+EG     TG LISL+EQ LVDC     NEGCNGG MD  F ++ +NGG+D+E  YPY   +G   T R N K    +D  + D+P  ++
Sbjct:    2 IEQHNQEYSQGKHSFTMAMNAFGDMTNEEFRQVMNGFQYQ------KHRKGKQFQERLLPEIPTSVDWREKGYMTPVKDQGQCGSCWAFSATGALEGQMFWKTGKLISLNEQNLVDCSGPQGNEGCNGGFMDNPFRYVQENGGLDSEASYPY---EGKVKTCRYNPKYSAANDTGFVDIPSQEK 176          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.664e-34
Identity = 68/122 (55.74%), Postives = 84/122 (68.85%), Query Frame = 2
Query:  380 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKAL 745
            P+S+DWR KGAV  VK+Q  CGSCWAFST+A VEGINKI TG LISLSEQEL+DCD   + GC GG    + +++ DNGG+ TE++YPY+   G C    K    V I  Y+ VP NDE +L
Sbjct:    2 PESIDWRDKGAVTPVKNQNPCGSCWAFSTVATVEGINKIRTGKLISLSEQELLDCDRR-SHGCKGGYQTGSIQYVADNGGVHTEKEYPYEKKQGKCRAKEKKGTKVQITGYKRVPANDEISL 122          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.664e-34
Identity = 87/219 (39.73%), Postives = 121/219 (55.25%), Query Frame = 2
Query:  110 MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYL-PRV--GEA---LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQ 748
            +F  ++VK+ K Y    EKE RFEIFK+NL  I+  N+   +    +N  AD+++ E     L    G K + ++ ++ N +  P V  G++   +PDS DWR + +V  VK Q  CGSCWAFS +A +E +  I     + LSEQ+LVDCD   N GCNGGLM +AFE II  GGI  E  YPY  +DG C   +   + V +       L  EK L+
Sbjct:   42 LFNEFVVKYNKVYKDDQEKEARFEIFKQNLADINARNALEDSAMFEINSRADISSNEL----LQKLTGLKLSLMRGEKKNSFCTPTVISGDSSGKVPDSFDWRDRNSVTSVKMQKECGSCWAFSAVANIESLYHIKHNVSLDLSEQQLVDCD-KVNNGCNGGLMSWAFEGIIRAGGISYEAPYPYTGVDGVC---KNTTRYVQLSGCYAYDLRSEKKLR 252          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.156e-33
Identity = 83/234 (35.47%), Postives = 125/234 (53.42%), Query Frame = 2
Query:   65 ESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEYRSMHLG-ARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDC-DTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQ 748
            E  S++   D  +   +  W  KHGK YN   E+ KR  ++++N + I+ HN E       + + +N F DLTN E+  M  G  R   K+T +       Y+P+        VDWR+ G V  VK+QG C S WAFS   ++EG     T  LI LSEQ L+DC  ++   GC+GG M YAF+++ DNGG+ TEE YPY+     C  + +N+    + D+  +P ++E  ++
Sbjct:   13 EVDSTAPTPDPSLDVEWNEWRTKHGKTYNMNEERLKR-AVWEKNFKMIELHNWEYLEGRHDFTMAMNAFGDLTNIEFVKMMTGFQRQKIKKTHIFQDHQFLYVPK-------RVDWRQLGYVTPVKNQGHCASSWAFSATGSLEGQMFRKTERLIPLSEQNLLDCMGSNVTHGCSGGFMQYAFQYVKDNGGLATEESYPYRGQGRECRYHAENS-AANVRDFVQIPGSEEALMK 237          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CATL2_PARTE (Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT00022898001 PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.156e-33
Identity = 83/216 (38.43%), Postives = 120/216 (55.56%), Query Frame = 2
Query:  110 MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFID--EHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDW--RKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKA 742
            ++  W +K+ + Y +  ++  RF++F +NL +I   + ++E+ TY + LN+FAD++ +E+ S +L  R   K   L +  +N             VDW   KK     VK+QGSCGSCWAFS + A+E    I       LSEQ+LVDC   Y NEGCNGG MD AFE++ DN G+   +DYPY A DG+C T  K      +  + D+   DE A
Sbjct:   25 LYANWKMKYNRRYTSQRDEMYRFKVFSDNLNYIRAFQDSTESATYTLELNQFADMSQQEFASTYLSLRV-PKTAKLNASNANFQYKGA------EVDWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNKKYELSEQDLVDCSGPYDNEGCNGGWMDSAFEYVADN-GLAEAKDYPYTAKDGTCKTSVKR-PYTHVQGFTDIDSCDELA 231          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.156e-33
Identity = 81/219 (36.99%), Postives = 121/219 (55.25%), Query Frame = 2
Query:   92 DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVG----LNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLND 733
            D  + A ++ W  K+ K+Y+ + E+ KR  +++ENL+ I  HN EN   K G    +N FAD T EE+R         A  T+  +++      +V   LP+  DWRK+G V  V++QG CGSCWAF+ + A+EG     TG+L  LS Q L+DC  S  N GC  G    AF +++ N G++ E  YPY+  DG C  + +NA    I  + ++P N+
Sbjct:   22 DPNLDAEWQDWKTKYAKSYSPVEEELKR-AVWEENLKMIQLHNKENGLGKNGFTMEMNAFADTTGEEFRKSLSDILIPAAVTNPSAQK------QVSIGLPNFKDWRKEGYVTPVRNQGKCGSCWAFAAVGAIEGQMFSKTGNLTPLSVQNLLDCSKSEGNNGCRWGTAHQAFNYVLKNKGLEAEATYPYEGKDGPCRYHSENAS-ANITGFVNLPPNE 232          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.795e-33
Identity = 80/219 (36.53%), Postives = 118/219 (53.88%), Query Frame = 2
Query:   92 DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLND 733
            D ++ A ++ W  K+ K+Y+   E  +R  +++EN+R I  HN EN      + + +N+F D T+EE+R         A  T   ++        V   LPD  DWR++G V  V++QG CGSCWAF+   A+EG     TG+L  LS Q L+DC  T  N+GC  G    AFE+++ N G++ E  YPY+  DG C  YR       I DY ++P N+
Sbjct:   22 DPKLDAEWKDWKTKYAKSYSPKEEALRR-AVWEENMRMIKLHNKENSLGKNNFTMKMNKFGDQTSEEFRKSIDNIPIPAAMTDPHAQN------HVSIGLPDYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGNKGCQSGTAHQAFEYVLKNKGLEAEATYPYEGKDGPC-RYRSENASANITDYVNLPPNE 232          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.559e-32
Identity = 87/226 (38.50%), Postives = 121/226 (53.54%), Query Frame = 2
Query:   98 EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHN----SENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLP-RVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD---------TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLND 733
            E  + F  +  K  K Y+   E  +RFEIFK NL  I+E N    +     K G+N+FADL+++E+++ +L  +       L       YL      ++P + DWR +GAV  VK+QG CGSCW+FST   VEG + I    L+SLSEQ LVDCD          + +EGCNGGL   A+ +II NGGI TE  YPY A  G+   +        I ++  +P N+
Sbjct:   24 EEQSQFLEFQDKFNKKYSH-EEYLERFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVAD---YLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNE 245          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.342e-32
Identity = 80/215 (37.21%), Postives = 127/215 (59.07%), Query Frame = 2
Query:   98 EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEK 739
            ++ ++F+ +++ + + Y +  E   R  +F  N+    +  + +R T + G+ +F+DLT EE+R+++L      K    K K++      VG+  P   DWR KGAV +VKDQG CGSCWAFS    VEG   +  G+L+SLSEQEL+DCD   ++ C GGL   A+  I + GG++TE+DY Y+    SC+   + AKV  I+D  ++  N++K
Sbjct:  182 KMASIFKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQYGVTKFSDLTEEEFRTIYLNTLL-RKEPGNKMKQAKS----VGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD-KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCNFSAEKAKVY-INDSVELSQNEQK 389          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.365e-32
Identity = 65/122 (53.28%), Postives = 86/122 (70.49%), Query Frame = 2
Query:  380 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKAL 745
            P+S+DWR+KGAV  VK+Q  CGSCWAFST+A +EGINKI+TG LISLSEQEL+DC+   + GC+GG    + ++++DN G+ TE +YPY+   G C    K    V I  Y+ VP NDE +L
Sbjct:    2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCEYR-SHGCDGGYQTPSLQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISL 121          
The following BLAST results are available for this feature:
BLAST of CB290545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CATL6_HUMAN3.571e-3441.85Putative cathepsin L-like protein 6 OS=Homo sapien... [more]
MEX2_JACME4.664e-3455.74Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATV_GVXN4.664e-3439.73Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
TEST2_RAT5.156e-3335.47Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATL2_PARTE5.156e-3338.43Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATJ_RAT5.156e-3336.99Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CATJ_MOUSE8.795e-3336.53Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CYSP1_DICDI2.559e-3238.50Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CATF_HUMAN3.342e-3237.21Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
MEX1_JACME4.365e-3253.28Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cb07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290545 ID=CB290545; Name=CB290545; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTT
ATGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAG
GTTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAA
CGCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTA
GGTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTG
AACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGG
TGCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACC
GTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGG
AAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTG
CTGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTA
CAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACA
TCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTT
CATTATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTACAAAG
CCATTGATGGTAGCTGTGACACATATCGGAAAAATGCCAAAGTAGTTACA
ATTGATGACTATGAAGATGTTCCCCTAAATGACGAGAAAGCTTTGCAAAA
back to top