CB290546

Overview
NameCB290546
Unique NameCB290546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:567..1377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_SULIK (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=M164_1717 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.723e-16
Identity = 56/184 (30.43%), Postives = 89/184 (48.37%), Query Frame = -1
Query:  267 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 812
            KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V    +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:   83 KPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_SULIA (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.27) GN=M1627_1786 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.723e-16
Identity = 56/184 (30.43%), Postives = 89/184 (48.37%), Query Frame = -1
Query:  267 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 812
            KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V    +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:   83 KPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_METBF (Putative thiazole biosynthetic enzyme OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A2100 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.251e-16
Identity = 59/180 (32.78%), Postives = 95/180 (52.78%), Query Frame = -1
Query:  267 LDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKS--IGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 794
            LD+ GI Y E Q  Y V          I     A    ++FN V+ ED++++   RV G+V NW  V++    +  +DP ++  K+V+   GH+       ++++ +  IG + ++ G K +     E  +V   +E+ PG+IV GM       +PRMGP FG M++SG+KAA LAL+ L
Sbjct:   84 LDDFGIRYKEYQPGYYVANSVESVGKLISGATSA--GAEVFNLVSFEDVMIRENDRVTGIVVNWGPVTVQ---RLHVDPLMIRTKLVIDGTGHEAVVCNTILRKIPNAKIGNLGKL-GEKPMWSEVGEQLVVDATKEIYPGLIVAGMAANAATCSPRMGPVFGGMLLSGEKAAKLALEKL 257          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_METBU (Putative thiazole biosynthetic enzyme OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_2109 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16
Identity = 57/184 (30.98%), Postives = 94/184 (51.09%), Query Frame = -1
Query:  264 LDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA------PGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSLG 794
            LDE GI Y E +N   + ++      ++S   +    ++FN V  ED++++    + G+V NW  V +    +  +DP  + +KVVV   GH     +      PG K L  +G++ E P    +  +  E  ++   +EV P + V GM    + GAPRMGP FG M++SG++ A L ++ LG
Sbjct:   84 LDEFGISYHEYENGYYVANSIESVGKLISGATSA-GAEIFNLVNVEDVMIRENDEICGLVINWTAVEIG---KLHVDPLAIRSKVVVDGTGHPAVVCSTVQRKVPGAK-LGELGVVGEKP----MWADVGEKMLLDTTKEVYPNLYVAGMAANAVAGAPRMGPVFGGMLLSGKQVAELIIERLG 258          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.839e-16
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = -1
Query:  261 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSLGQ 683
            K+   V  +D+I +G   RV G++  W  + M+      +DP    AK V+ + GHD    +   +++  +G+  ++PG K+     +E  +V    +V PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:  117 KIILGVHVDDVIFRGDPPRVAGLLWIWTPIQMSG---MHVDPLYTMAKAVIDATGHDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_METMP (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis GN=MMP1352 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.839e-16
Identity = 65/188 (34.57%), Postives = 90/188 (47.87%), Query Frame = -1
Query:  267 KPAHIFLDELGIDYDEQDNYVVIKHAALFTST---IMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 812
            KPA   L E GI  DE     VI    LFT+    + +KL         K+   +  EDLI+K  +V GVV     +         +DP  + AK V+ S GHD        ++ K +G+  EVPG K++  +  E+++ R  REV PG+ V GM         RMG  FG M +SG+K A L L+ L
Sbjct:   82 KPADEILREAGIKLDE-----VIGEPELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKVSGVVIQSYSIEK---AGLHIDPITISAKYVIDSTGHDASVINTLARKNKDLGI--EVPGEKSMWADKGENSLTRNTREVFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAELILEKL 259          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.014e-16
Identity = 59/207 (28.50%), Postives = 101/207 (48.79%), Query Frame = -1
Query:  267 PAHIFLDELGI--DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGAPGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 809
            PA   LD+LG+  +YDE+++ + +  A    S +++        ++ N     D++V+    V G V NW  V       +C+DP  +EA VVV + GHD          G   A G++ ++  + GM +           + PG  ++ +  +ED +V    +V  G++  G+  A + G  RMGP FGAM++SG+ AA+  +  L
Sbjct:   85 PAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMITAA-CDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.014e-16
Identity = 59/207 (28.50%), Postives = 101/207 (48.79%), Query Frame = -1
Query:  267 PAHIFLDELGI--DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGAPGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 809
            PA   LD+LG+  +YDE+++ + +  A    S +++        ++ N     D++V+    V G V NW  V       +C+DP  +EA VVV + GHD          G   A G++ ++  + GM +           + PG  ++ +  +ED +V    +V  G++  G+  A + G  RMGP FGAM++SG+ AA+  +  L
Sbjct:   85 PAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMITAA-CDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_SULIN (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1140 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.459e-15
Identity = 55/184 (29.89%), Postives = 88/184 (47.83%), Query Frame = -1
Query:  267 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 812
            KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  + G K+     AE+  V    +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:   83 KPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IAGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_METMA (Putative thiazole biosynthetic enzyme OS=Methanosarcina mazei GN=MM_0222 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.459e-15
Identity = 55/178 (30.90%), Postives = 93/178 (52.25%), Query Frame = -1
Query:  267 LDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIE-EVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 794
            LD+ GI Y E +    + ++      +++   +    ++FN V+ ED++++   RV G+V NW  V+     +  +DP ++  K+V+   GHD       ++++ +  + E  + G K +     E   V   +E+ PG+IV GM       APRMGP FG M++SG+KAA LAL  L
Sbjct:   84 LDDFGIRYKEYEPGYFVANSVESVGKLIAGATSA-GAEVFNLVSFEDIMIRENDRVTGIVINWGPVTTQ---RLHVDPLMIRTKLVIDGTGHDAVVCNTILRKIPNAKIGEFGILGEKPMWSEVGERLAVDATQEIYPGLIVAGMAANAATRAPRMGPVFGGMLLSGEKAAKLALDRL 257          
The following BLAST results are available for this feature:
BLAST of CB290546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
THI4_SULIK1.723e-1630.43Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIA1.723e-1630.43Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METBF2.251e-1632.78Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_METBU2.939e-1630.98Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_PYRAR3.839e-1634.27Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_METMP3.839e-1634.57Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_HALSA5.014e-1628.50Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS35.014e-1628.50Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_SULIN1.459e-1529.89Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METMA1.459e-1530.90Putative thiazole biosynthetic enzyme OS=Methanosa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290546 ID=CB290546; Name=CB290546; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTGACCGGAAAAAACACTTTATTCACAAAACCTCA
CAACATTATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAATA
CAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGA
TGATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAATCAGC
TGCAGCTAAGATCAGCTCAGGGGGAACGCCTCCCACATATGTACCGTCTA
ATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGC
CCCGATATCATCATTGCTCCAAATGGTGGCCCCATTCGAGGAGCACCATC
AATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCCC
TGGGCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTTC
ATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTCC
AGGGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTCG
CTTCCATTACATTGGGATCCATGCAAGACTGTGTATCGTGATTCATTGAC
ACCAACGCCCAGTTGGTCACCACACCACCAACTCTGCCGCCTTTGACTAT
CAAGTCCTCGGCTGCCACTGCATTAAAGAGCTTGACGTTGGGGCGGGCCA
GGAGCTTGCTCATTATAGTGGAGGTGAACAGCGCTGCATGCTTGATCACA
ACATAGTTGTCTTGCTCATCGTAGTCGATGCCAAGCTCGTCAAGGAAGAT
GTGGGCTGGTTT
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