CB290546

Overview
NameCB290546
Unique NameCB290546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:567..1377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_FERNB (Putative thiazole biosynthetic enzyme OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=Fnod_1422 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.459e-15
Identity = 57/190 (30.00%), Postives = 87/190 (45.79%), Query Frame = -1
Query:  267 FLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKA-------------LDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 797
            +L E  I Y ++D ++V+   A+  ++ M     +    +FN V  EDL++   R+ GVV NW         +  +DP  + AK  V   GH        V+ L   G+I  V G                +D  + E  +V   +E+ PG+ V GM    + G PRMGP FG M++SG +AA L  + L
Sbjct:   83 YLKEHHIKYKKEDEFIVVD--AVHFASAMLYNATKNGAYIFNNVFVEDLVMYNERISGVVINWMPTIKE---KLHVDPITVVAKFTVDGTGHPANL----VRLLSKRGIINSVKGSSENLCSCGVVEYEFPMDAENGEKFVVENTKEIYPGLYVMGMAAVSVGGGPRMGPIFGGMIMSGLRAAELIEEEL 263          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_METAC (Putative thiazole biosynthetic enzyme OS=Methanosarcina acetivorans GN=MA_2851 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.905e-15
Identity = 54/178 (30.34%), Postives = 94/178 (52.81%), Query Frame = -1
Query:  267 LDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIE-EVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 794
            LD+ GI Y E ++   + ++      +++   +    ++FN V+ ED++++   RV G+V NW  V+     +  +DP ++  K+V+   GH+       ++++ +  + E  + G K +     E   V   +E+ PG+IV GM       APRMGP FG M++SG+KAA LAL  L
Sbjct:   84 LDDFGIRYKEYESGYYVANSVESVGKLIAGATSA-GAEVFNLVSFEDIMIRENDRVTGIVINWGPVTTQ---RLHVDPLMIRTKLVIDGTGHEAVVCNTILRKIPNAKIGELGLLGEKPMWSEVGERLAVNATQEIYPGLIVAGMAANAATRAPRMGPVFGGMLLSGEKAAKLALDRL 257          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_METM7 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0597 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.488e-15
Identity = 61/188 (32.45%), Postives = 88/188 (46.81%), Query Frame = -1
Query:  267 KPAHIFLDELGIDYDEQDNYVVIKHAALFTST---IMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 812
            KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD        ++ K +G+  EVPG K++     E+++ R  RE+ PG+ V GM         RMG  FG M +SG+K A + L+ L
Sbjct:   82 KPADEILREAGIKLDEVDG-----EDELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKL 259          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_META3 (Putative thiazole biosynthetic enzyme OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_0798 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.488e-15
Identity = 51/181 (28.18%), Postives = 92/181 (50.83%), Query Frame = -1
Query:  267 PAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 809
            PA   L E+GI  +E ++ + +  +    + + +  +     K+   +  ED+I+K G+V GVV N   ++        +DP  + AK V+ + GHD        ++ + +G++  +PG K+L  +  E+ +++  +E+ PG+ V GM      G  RMG  FG M ISG+  A + L+ L
Sbjct:   86 PADEILSEVGIKLEEGEDGLFVADSVEVPAKLGTGAIDA-GAKVLTGIVVEDVILKEGKVSGVVINSYAINK---AGLHIDPLTINAKYVIDATGHDASVACTLARKNEDLGLV--IPGEKSLWADEGENGLLKYTKELFPGLFVCGMASNATHGGYRMGAVFGGMYISGKIVADMILEKL 260          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_METM6 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1321 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15
Identity = 60/188 (31.91%), Postives = 88/188 (46.81%), Query Frame = -1
Query:  267 KPAHIFLDELGIDYDEQDNYVVIKHAALFTST---IMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 812
            KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD        ++ K +G+  EVPG K++     E+++ R  RE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:   82 KPADDILREAGIKLDEVDG-----EEELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_METM5 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0226 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.244e-15
Identity = 60/188 (31.91%), Postives = 88/188 (46.81%), Query Frame = -1
Query:  267 KPAHIFLDELGIDYDEQDNYVVIKHAALFTST---IMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 812
            KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD        ++ K +G+  EVPG K++     E+++ R  RE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:   82 KPADEILREAGIKLDEVDG-----EDELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_ARCFU (Putative thiazole biosynthetic enzyme OS=Archaeoglobus fulgidus GN=AF_0702 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.240e-15
Identity = 57/187 (30.48%), Postives = 92/187 (49.20%), Query Frame = -1
Query:  267 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARP---NVKLFNAVAAEDLIVKGGRVG--GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 812
            + A   LD+ GI Y E  N++V   A       M+KL A+      K+ + V+ ED+I +   +G  GV   W+ V ++      +DP  + ++ VV + GHD    +   ++   I +   V G ++     AE  IV    ++V G+   GM VA +   PRMGP FG M++SG+K A +  + L
Sbjct:   83 REAKDILDDFGIRYTEHRNFLVADSAEF-----MAKLAAKAIDAGAKIIHGVSVEDVIFRDDPLGVRGVCIQWSAVEISG---LHVDPLFLRSRAVVDATGHDAEVISVAARK---IPLEVSVVGERSAYSEVAEREIVEKTGKIVKGLYAAGMAVAAVHNLPRMGPIFGGMLLSGKKVAEIVAEDL 258          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_DESOH (Putative thiazole biosynthetic enzyme OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=Dole_2426 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.456e-15
Identity = 61/180 (33.89%), Postives = 86/180 (47.78%), Query Frame = -1
Query:  267 ELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF------GAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 788
            E+G     +D Y      A+ T T  +   A+  V +FN V  ED++++  R+ G+V NW+ V M       +DP  M A  V+ + GH            PG  R  S G IE   G K++  + AE   +   REV PG+ V GM      G PRMG  FG M++SG+K A   L+ L
Sbjct:   88 EIGYRLYAEDYYTADAVEAISTLTSQA---AKAGVAIFNCVTVEDVMIRPDRIVGLVLNWSPVEM---AGLHVDPLAMRASFVIDATGHATEVVHVVAKKVPGTLRTDS-GKIE---GEKSMWSDRAESLTLENTREVYPGLYVAGMAGNATFGGPRMGAIFGGMLLSGEKVAAEILERL 257          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_METVS (Putative thiazole biosynthetic enzyme OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0663 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.106e-14
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = -1
Query:  261 KLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSLGQ 683
            K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD    +   ++ K +G+  EVPG K++     E+++ R  RE+ PG+ V GM         RMG  FG M +SG+K A L L+ L +
Sbjct:  126 KILTGIVVEDLILKEDKISGVVIQSYSIEK---AGLHVDPITISAKYVIDSTGHDASVVSTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLFVCGMTANAYHAGYRMGAIFGGMYLSGKKCAELILEKLNK 261          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_PYRIL (Putative thiazole biosynthetic enzyme OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_1998 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.693e-14
Identity = 48/141 (34.04%), Postives = 76/141 (53.90%), Query Frame = -1
Query:  267 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSL 683
            K+   V  +D+I +G   RV G++  W  + M+    S +DP   +AK V+ + GHD    +   +++  +G+  EV G K+     +E  +V     V PG+ V GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:  117 KIILGVHVDDVIFRGDPPRVVGLLWVWTPIQMSG---SHVDPLYTQAKAVLDATGHDAEVISIAARKVPELGI--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYVAGMAVCTVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
The following BLAST results are available for this feature:
BLAST of CB290546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
THI4_FERNB1.459e-1530.00Putative thiazole biosynthetic enzyme OS=Fervidoba... [more]
THI4_METAC1.905e-1530.34Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_METM72.488e-1532.45Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_META32.488e-1528.18Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM63.250e-1531.91Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM54.244e-1531.91Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_ARCFU7.240e-1530.48Putative thiazole biosynthetic enzyme OS=Archaeogl... [more]
THI4_DESOH9.456e-1533.89Putative thiazole biosynthetic enzyme OS=Desulfoco... [more]
THI4_METVS2.106e-1433.33Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_PYRIL4.693e-1434.04Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cb08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290546 ID=CB290546; Name=CB290546; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTGACCGGAAAAAACACTTTATTCACAAAACCTCA
CAACATTATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAATA
CAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGA
TGATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAATCAGC
TGCAGCTAAGATCAGCTCAGGGGGAACGCCTCCCACATATGTACCGTCTA
ATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGC
CCCGATATCATCATTGCTCCAAATGGTGGCCCCATTCGAGGAGCACCATC
AATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCCC
TGGGCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTTC
ATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTCC
AGGGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTCG
CTTCCATTACATTGGGATCCATGCAAGACTGTGTATCGTGATTCATTGAC
ACCAACGCCCAGTTGGTCACCACACCACCAACTCTGCCGCCTTTGACTAT
CAAGTCCTCGGCTGCCACTGCATTAAAGAGCTTGACGTTGGGGCGGGCCA
GGAGCTTGCTCATTATAGTGGAGGTGAACAGCGCTGCATGCTTGATCACA
ACATAGTTGTCTTGCTCATCGTAGTCGATGCCAAGCTCGTCAAGGAAGAT
GTGGGCTGGTTT
back to top