CB290547

Overview
NameCB290547
Unique NameCB290547
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:60..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290547 vs. ExPASy Swiss-Prot
Match: THI4_METMP (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis GN=MMP1352 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.365e-13
Identity = 58/178 (32.58%), Postives = 85/178 (47.75%), Query Frame = 1
Query:  286 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 801
            E  V++ + +      +   D D    GAG +GL+ A  L++N  ++  ++E+ +S GGG W GG  F  +VV KPA   L E GI  DE     VI    LFT+    + +KL         K+   +  EDLI+K  +V GVV     +         +DP  + AK V+ S GHD
Sbjct:    9 EVAVTKSILKSTFDMWMDLIDVDVVIVGAGPSGLTAAKYLAQN-GVKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADEILREAGIKLDE-----VIGEPELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKVSGVVIQSYSI---EKAGLHIDPITISAKYVIDSTGHD 177          
BLAST of CB290547 vs. ExPASy Swiss-Prot
Match: THI4_METM7 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0597 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.329e-13
Identity = 56/178 (31.46%), Postives = 84/178 (47.19%), Query Frame = 1
Query:  286 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 801
            E  V++ + +      +   D D    GAG +GL+ A  L++N  ++  ++E+ +S GGG W GG  F  +VV KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD
Sbjct:    9 EVAVTKSILKSTFNMWMDIIDVDVVIIGAGPSGLTAAKYLAQN-GVKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADEILREAGIKLDEVDG-----EDELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAI---EKAGLHIDPLTISAKYVIDSTGHD 177          
BLAST of CB290547 vs. ExPASy Swiss-Prot
Match: THI4_SULTO (Putative thiazole biosynthetic enzyme OS=Sulfolobus tokodaii GN=ST0361 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.156e-12
Identity = 51/185 (27.57%), Postives = 88/185 (47.57%), Query Frame = 1
Query:  253 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 801
            D N+ K   + E  +S+ + +    D     ++D    GAG +G++ AY L+K   ++  + E+ +S GGG   G  LF  +V+  PA   L E+ I  ++ +  V I  +A F + + +  +     K+ + V  +D+I +    +V GV   W    M       +DP  + AK VV + GHD
Sbjct:    2 DSNSIKVKQVDEVKISKYILKYTFQDWEDIVESDVVIVGAGPSGMTAAYYLAK-AGLKTVVFERRLSFGGGIGGGAMLFHKIVIESPADEILKEMKIKLNKVEEGVYIVDSAEFMAKLAASAIDA-GAKIIHGVTVDDVIFRENPLKVVGVAVEWTATQM---AGLHVDPLFISAKAVVDATGHD 181          
BLAST of CB290547 vs. ExPASy Swiss-Prot
Match: THI4_METM5 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0226 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.156e-12
Identity = 55/178 (30.90%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  286 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 801
            E  V++ + +      +   D D    GAG +GL+ A  L++   ++  ++E+ +S GGG W GG  F  +VV KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD
Sbjct:    9 EVAVTKSILKSTFNMWMDVIDVDVVIVGAGPSGLTAAKYLAQK-GVKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADEILREAGIKLDEVDG-----EDELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAI---EKAGLHIDPLTISAKYVIDSTGHD 177          
BLAST of CB290547 vs. ExPASy Swiss-Prot
Match: THI4_METM6 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1321 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.972e-12
Identity = 55/178 (30.90%), Postives = 82/178 (46.07%), Query Frame = 1
Query:  286 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 801
            E  V++ + +      +   D D    GAG +GL+ A  L++    +  ++E+ +S GGG W GG  F  +VV KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD
Sbjct:    9 EVAVTKSILKSTFNMWMDIIDVDVVIVGAGPSGLTAAKYLAQK-GFKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADDILREAGIKLDEVDG-----EEELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAI---EKAGLHIDPLTISAKYVIDSTGHD 177          
BLAST of CB290547 vs. ExPASy Swiss-Prot
Match: THI4_METJA (Putative thiazole biosynthetic enzyme OS=Methanocaldococcus jannaschii GN=MJ0601 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.575e-12
Identity = 49/153 (32.03%), Postives = 77/153 (50.33%), Query Frame = 1
Query:  346 DTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 801
            + D    GAG +GL+CA  L+K    ++ ++E+ ++ GGG W GG  F  +VV +PA   L E+GI   D  D Y V     +     ++ + A    K+   +  EDLI++   V GVV N   +         +DP  + +KVVV + GH+
Sbjct:   32 EADVVIVGAGPSGLTCARYLAKE-GFKVVVLERHLAFGGGTWGGGMGFPYIVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDA--GAKILTGIVVEDLILREDGVAGVVINSYAIER---AGLHIDPLTIRSKVVVDATGHE 178          
BLAST of CB290547 vs. ExPASy Swiss-Prot
Match: THI4_METS5 (Putative thiazole biosynthetic enzyme OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2221 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 54/187 (28.88%), Postives = 89/187 (47.59%), Query Frame = 1
Query:  256 LNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 801
            +N  + D IK   ++R + +    D + ++  D    GAG +GL+ AY  +K   ++  + E+ +S GGG   G  LF  +V+  PA   L E+G+   + +  V +    + +S  M+KL A       K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD
Sbjct:    1 MNIKQVDEIK---ITRYILKATFEDWMDFSVNDVVIVGAGPSGLAAAYYSAK-AGLKTTVFERRLSFGGGIGGGAMLFHKIVIESPADEILREIGVKLQKFEEGVYV----VDSSEFMAKLAAATIDAGAKIIHGVTVDDVIFRENPLRVTGVAVEWTATQM---ASLHVDPLFISAKAVVDATGHD 176          
BLAST of CB290547 vs. ExPASy Swiss-Prot
Match: THI4_DESMR (Putative thiazole biosynthetic enzyme OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=DMR_31420 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.180e-11
Identity = 49/178 (27.53%), Postives = 90/178 (50.56%), Query Frame = 1
Query:  280 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG----GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 798
            + E I+++ +   Y     +  D D    G G +G++ A  L+ +    +A+ E+ +S GGG W GG  F+ +VV++ +   L ++G+     +DNY      A  T+   +  LA    K+FN ++ ED++++      RV G+V N + V +       +DP V+ +K +V + GH
Sbjct:    3 LDERIITQAILETYFEKFKSSLDLDVAIVGGGPSGMTAARLLAAD-GFNVALFERKLSLGGGMWGGGMTFNMIVVQEESVHLLTDVGVPVKRYKDNYFTADAVAATTTLASAACLA--GAKIFNCMSVEDVMLREENGVKRVTGIVINSSPVEI---AGLHVDPVVLGSKYLVEATGH 174          
The following BLAST results are available for this feature:
BLAST of CB290547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
THI4_METMP1.365e-1332.58Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM72.329e-1331.46Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_SULTO1.156e-1227.57Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METM51.156e-1230.90Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM61.972e-1230.90Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METJA2.575e-1232.03Putative thiazole biosynthetic enzyme OS=Methanoca... [more]
THI4_METS54.392e-1228.88Putative thiazole biosynthetic enzyme OS=Metallosp... [more]
THI4_DESMR2.180e-1127.53Putative thiazole biosynthetic enzyme OS=Desulfovi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290547 ID=CB290547; Name=CB290547; organism=Citrus sinensis; type=EST; length=811bp
GCACTTGGTGCAAATCAAATTACTTCTCATTATCAAACTTCTCAGCAGCA
GGGGAAGGAGGGGTAAAAAAAAAAAACCATGGCAGCCATGGCTTCTACAG
CTTTCGCTCCTTCAGTTTCGTCCACCACCAATAAGCTCTTTGACTCATCC
TTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCAA
ATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTT
ATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTCT
CGTGAAATGACACGCAGGTACATGACGGACATGATCACTTATGCTGACAC
TGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATG
AGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGTT
AGCCCCGGCGGTGGCGCGTGGCTCGGTGGACAGCTCTTCTCTGCCATGGT
TGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTACG
ATGAGCAAGACAACTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCC
ACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGC
AGTGGCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGG
TGACCAACTGGGCGTTGGTGTCAATGAATCACGATACACAGTCTTGCATG
GATCCCAATGTAATGGAAGCGAAGGTGGTTGTGAGCTCTTGTGGCCATGA
TGGGCCTTTTG
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