CB290549

Overview
NameCB290549
Unique NameCB290549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.944e-12
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   16 GMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 225
            G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  181 GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.101e-11
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   16 GMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 228
            G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  181 GLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.454e-11
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   16 GMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 225
            G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  181 GLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.466e-11
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   16 GMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 228
            GM+E    +  + +  +ED +V  T EV PG+ V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  188 GMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.139e-11
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   34 PGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 231
            PG  ++ ++ +ED +V  T  V PG+  TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  227 PGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
The following BLAST results are available for this feature:
BLAST of CB290549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
THI4_PYRHO4.944e-1251.43Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU1.101e-1149.30Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB2.454e-1151.43Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE5.466e-1149.30Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_HALWD7.139e-1146.97Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290549 ID=CB290549; Name=CB290549; organism=Citrus sinensis; type=EST; length=641bp
GCACTATGGAGTATCGGAATGATTGAGGAAGTGCCTGGAATCAAGGCACT
GGACATGAACTCTGCAGAAGATGCTATTGTGAGGCTGACCAGGGAGGTTG
TGCCTGGTATGACAGTTACCGGCATGGAAGTTGCCGAGATTGATGGTGCT
CCTAGAATGGGGCCAACATTTGGAGCAATGATGATATCGGGGCAGAAGGC
TGCGCATTTGGCGTTGAAGTCACTGGGCCAGCCGAATGCATTAGACGGTA
CATATGTGGGAGGTGTTCACCCTGAGCTGATCTTAGCTGCAGCTGATTCT
GCTGAGACTGCTGATGGTTAATTTGATAATAACAGGCATCATCACTCATC
AGCTGTGTGCATGCAAATAAACTCTGGCAAAAAAGTAGTTGTATTTAGGT
GGTTGTGATGGATGGTTGATGCGAATAATGAGATGATGTTGTGAGGTTTT
GTGAATAAAGTGTTTGTTTCCGGTCCATCATGCAACCTTTAATTTTAATT
TCTTTCTCCTCTTGTAAGAAACCGTTGTGAGTTTTTCGGGGGTGAATTTG
CAGTTGCGTATCTAGTCCTTGTTATCTGTATTATGTGTAAGACTGCCCTT
GGGCTGTTCCCTTTTAAAAACAAACAAAAAAAAAAAAAAAA
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