CB290551

Overview
NameCB290551
Unique NameCB290551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.841e-24
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  476 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            FE  + FG  GA  ++N    E +L  + L+ +PN G +   CNSW+++    K+ R+FF N  YLPS TP  L +YR EEL +LRG+G G+RK +DRIYDYDVYNDL
Sbjct:  111 FEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEELEVLRGDGTGKRKDFDRIYDYDVYNDL 218          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 57/119 (47.90%), Postives = 71/119 (59.66%), Query Frame = 2
Query:  446 GDGNMQYESEFEVPSGFGEIGAILVEN-EHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            GD    +   FE  S  G  GA  +EN     E +L  + LD +PN G +   CNSW+++    +  R+FF NK YLPS TP  L  YR EEL  LRG+G GER+ +DRIYDYDVYNDL
Sbjct:  100 GDKQSAFSVHFEWDSNMGTPGAFYIENFMQGGEFFLVSLTLDDVPNVGSIKFACNSWIYNDKKYQSDRIFFANKTYLPSATPAPLVSYRQEELKTLRGDGTGERQEWDRIYDYDVYNDL 218          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.257e-24
Identity = 65/153 (42.48%), Postives = 84/153 (54.90%), Query Frame = 2
Query:  368 VSAELDPKTGLDKSTIQD---YARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVT------CNSWLHSKHDNKQKRVFF-TNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            VS+ELDPKTG +   I     ++R+   D D    YE+ F         GA+ + N HH EM L ++ +      P   +      C SW+   H +  KR FF   K Y+PSQTP G+++ R  EL  LRGNG GERK +DRIYDYDVYNDL
Sbjct:  118 VSSELDPKTGQEHDVISGKLKHSRETEKDYD---LYEAIFTCRHRLAPSGAVRLVNYHHTEMLLGEVKIFPAGEDPTKSSAVTLFHCQSWIDPSHCSPDKRTFFPVEKSYIPSQTPKGVEKLRKSELEALRGNGCGERKKHDRIYDYDVYNDL 267          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 2
Query:  506 GAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            GA  ++N    E YLK + L+ +PN G ++  CNSW+++    K  R+FF N  YLPS+TP  L +YR EEL  +RG+G GERK +DR+YDYDVYNDL
Sbjct:    3 GAFYIKNFMQVEFYLKSLTLEDIPNHGTIHFICNSWIYNSKVYKSDRIFFANNTYLPSETPAPLLKYREEELKNVRGDGSGERKEWDRVYDYDVYNDL 100          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.034e-22
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  494 FGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            FG  GA +++N H  E +LK + L+ +PN G ++  CNSW++     K  R+FF N+ YLPS+TP  L++YR  EL  LRG+G G+ + +DR+YDY  YNDL
Sbjct:  104 FGVPGAFIIKNLHLNEFFLKSLTLEDVPNYGKIHFVCNSWVYPAFRYKSDRIFFANQAYLPSETPQPLRKYRENELVALRGDGTGKLEEWDRVYDYACYNDL 205          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.034e-22
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 2
Query:  476 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVT-----CNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQ-GERKTYDRIYDYDVYNDL 796
            F+     G   A +++N HH + YLK + L G P+G    T     CNSW++  H  +  RVFF+NK YLPS+TP+ +K  R EEL  LRGN + GE K +DR+YDY  YNDL
Sbjct:  116 FDWDESMGPPAAFVIKNHHHSQFYLKSLTLRGFPDGEGGATAIHFICNSWIYPNHRYRSDRVFFSNKAYLPSETPELIKELREEELKNLRGNEKGGEFKEWDRVYDYAYYNDL 228          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.447e-20
Identity = 53/117 (45.30%), Postives = 69/117 (58.97%), Query Frame = 2
Query:  452 GNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQ-GERKTYDRIYDYDVYNDL 796
            G   +   FE     G  GA++V N +  E +LK + LDG+P  G V    NSW++   + + +RVFF N  YLPS+ P  L  YR EEL ILRG+G+ G  K +DRIY YD YNDL
Sbjct:   97 GESVFRVAFEWDESQGIPGAVVVTNSNRSEFFLKTLTLDGVPGKGTVVFVANSWIYPADNYQYERVFFANDTYLPSKMPAPLIPYRQEELNILRGDGKIGPYKEHDRIYRYDYYNDL 213          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.998e-19
Identity = 51/103 (49.51%), Postives = 63/103 (61.17%), Query Frame = 2
Query:  497 GEIGAILVENEHHKEMYLKDIVLDGLPN--GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNG-QGERKTYDRIYDYDVYNDL 796
            G  GAI+V+N H  E +LK I LD +P   G V    NSW++     +  RVFF N  YLPSQ P  LK YR +EL  LRG+  QG  + +DR+Y YDVYNDL
Sbjct:  107 GVPGAIIVKNHHSNEFFLKTITLDDVPGRAGAVVFLANSWVYPADKYRYDRVFFANDAYLPSQMPAALKPYRDDELRNLRGDDQQGPYEEHDRVYRYDVYNDL 209          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.039e-18
Identity = 53/119 (44.54%), Postives = 70/119 (58.82%), Query Frame = 2
Query:  446 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLP-NGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNG-QGERKTYDRIYDYDVYNDL 796
            G+       E+EV    G  GAI+V+N H  E +LK I LD +P +G V    NSW++     +  RVFF+N   LPS+ P  LK YR +EL  LRG+  QG  + +DR+Y YDVYNDL
Sbjct:   89 GESKFGVTFEWEVEK-MGIPGAIIVKNNHAAEFFLKTITLDNVPGHGAVVFVANSWIYPASKYRYNRVFFSNDTSLPSKMPAALKPYRDDELRNLRGDDQQGPYQEHDRVYRYDVYNDL 206          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.770e-18
Identity = 54/120 (45.00%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  446 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVT--CNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNG-QGERKTYDRIYDYDVYNDL 796
            G+       ++EV    G  GAI+V N H  E  LK I L  +P    N+T   NSW++   + +  RVFF N  YLPSQ P  LK YR +EL  LRG+  QG  + +DRIY YDVYNDL
Sbjct:   91 GESKFGLTFDWEVEK-LGVPGAIVVNNYHSSEFLLKTITLHDVPGRSGNLTFVANSWIYPAANYRYSRVFFANDTYLPSQMPAALKPYRDDELRNLRGDDQQGPYQEHDRIYRYDVYNDL 209          
The following BLAST results are available for this feature:
BLAST of CB290551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOXX_SOYBN4.841e-2449.07Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX1_LENCU6.322e-2447.90Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOX22_HORVU8.257e-2442.48Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOXB_PHAVU1.840e-2351.02Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOXB_SOLLC2.034e-2246.08Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX5_ARATH2.034e-2246.02Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ORYSJ9.447e-2045.30Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX3_ORYSJ7.998e-1949.51Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX2_ORYSJ3.039e-1844.54Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX1_HORVU6.770e-1845.00Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290551 ID=CB290551; Name=CB290551; organism=Citrus sinensis; type=EST; length=797bp
GCACTAGGAAATTCTAAAGCATCTTCTTCTTACTTGAAAAACAATGTTGA
AGCCACAGGTTCATCAACCTCAATCTATCAAACCCCTATTTCCATTATCC
AAGCCGTTTCTCCATGGAAATTACGGCCATGCCTTTCGTCCAGTTCAATC
AACTTCTACACTTTTTAAAGGAAGTCCCAAACTTCGGATTGGTTCTGTTC
CCAGAAACACTATCAAAGCTATAGCAACTTCCACTGAAAAATCAATCAAA
GTTAAGGCTGTTGTTACTGTGAAACCAACTGTGGGAGGCTTCCTCTCAAA
TATTTCTTTAGACCAAGGGTTAGATGATCTTGGAGATTTGTTTGGTAAAT
CACTCCTCTTGGAGCTTGTCAGTGCTGAGCTTGACCCCAAGACGGGATTG
GATAAATCCACCATCCAAGATTATGCGCGCAAAATTGGTGCGGACGGGGA
TGGAAACATGCAATATGAATCAGAATTCGAAGTCCCATCTGGATTTGGAG
AAATTGGCGCAATATTAGTGGAAAATGAGCACCACAAAGAGATGTATTTG
AAAGATATTGTTCTTGATGGTTTGCCAAATGGTCCTGTCAACGTAACATG
TAATTCATGGCTTCACTCAAAGCACGACAATAAACAAAAGAGAGTTTTCT
TTACCAACAAGTTGTACTTGCCATCACAAACACCAGACGGATTGAAGAGA
TATAGAGCTGAGGAGCTTACCATTTTGCGAGGTAATGGACAAGGAGAGCG
CAAAACCTATGATAGAATCTATGATTATGATGTCTACAATGATCTTG
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