CB290551

Overview
NameCB290551
Unique NameCB290551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12709 contig Csv1_Contig12709:18..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.277e-16
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 2 
Query:  497 GEIGAILVENEHHKEMYLKDIVLDGLPNGPVNV-TCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRG-NGQGERKTYDRIYDYDVYNDL 796
            G  GAI+++N H  + +LK I L  +P     V   NSW++        R+FF N  YLPSQ P+ L+ YR +EL  LRG + QG  + +DRIY YDVYNDL
Sbjct:  105 GVPGAIIIKNHHSTKFFLKTITLHDVPGCDTIVFVANSWIYPVGKYHYNRIFFANNSYLPSQMPEALRPYREDELRYLRGEDRQGPYQEHDRIYRYDVYNDL 206
The following BLAST results are available for this feature:
BLAST of CB290551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX1_ORYSJ1.277e-1645.10Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cb10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290551 ID=CB290551; Name=CB290551; organism=Citrus sinensis; type=EST; length=797bp
GCACTAGGAAATTCTAAAGCATCTTCTTCTTACTTGAAAAACAATGTTGA
AGCCACAGGTTCATCAACCTCAATCTATCAAACCCCTATTTCCATTATCC
AAGCCGTTTCTCCATGGAAATTACGGCCATGCCTTTCGTCCAGTTCAATC
AACTTCTACACTTTTTAAAGGAAGTCCCAAACTTCGGATTGGTTCTGTTC
CCAGAAACACTATCAAAGCTATAGCAACTTCCACTGAAAAATCAATCAAA
GTTAAGGCTGTTGTTACTGTGAAACCAACTGTGGGAGGCTTCCTCTCAAA
TATTTCTTTAGACCAAGGGTTAGATGATCTTGGAGATTTGTTTGGTAAAT
CACTCCTCTTGGAGCTTGTCAGTGCTGAGCTTGACCCCAAGACGGGATTG
GATAAATCCACCATCCAAGATTATGCGCGCAAAATTGGTGCGGACGGGGA
TGGAAACATGCAATATGAATCAGAATTCGAAGTCCCATCTGGATTTGGAG
AAATTGGCGCAATATTAGTGGAAAATGAGCACCACAAAGAGATGTATTTG
AAAGATATTGTTCTTGATGGTTTGCCAAATGGTCCTGTCAACGTAACATG
TAATTCATGGCTTCACTCAAAGCACGACAATAAACAAAAGAGAGTTTTCT
TTACCAACAAGTTGTACTTGCCATCACAAACACCAGACGGATTGAAGAGA
TATAGAGCTGAGGAGCTTACCATTTTGCGAGGTAATGGACAAGGAGAGCG
CAAAACCTATGATAGAATCTATGATTATGATGTCTACAATGATCTTG
back to top