CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_YARLI (ATP-dependent RNA helicase DBP5 OS=Yarrowia lipolytica GN=DBP5 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.952e-31
Identity = 83/208 (39.90%), Postives = 117/208 (56.25%), Query Frame = 2
Query:  209 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGD-----------------------TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            A   E K   + DV+    ++ KKV K  D+ ED+  ++    +                       +P  SA  FEDL L   LLKGLY  MKF KPSKIQ  +LP++L+ P  N+I Q+++G+GKT  F L MLSRVDPNLKA Q +C+ P+RELA Q L+V+ +M K T IT+   VP  +       +   VT+Q+++GTPG++
Sbjct:   26 AKVEEVKEDDKKDVKEELNEDDKKVAKEDDKKEDAKEESKEDAEENNLIQTEYEVRVKLADLQADPNSPLYSAKRFEDLGLDENLLKGLYA-MKFNKPSKIQEKALPLLLSDPPHNMIGQSQSGTGKTGAFSLTMLSRVDPNLKAVQCICLAPSRELARQTLDVVDEMKKFTDITTHLIVPEST------ERGQKVTSQILVGTPGSV 226          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_ASHGO (ATP-dependent RNA helicase DBP5 OS=Ashbya gossypii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.961e-30
Identity = 72/142 (50.70%), Postives = 98/142 (69.01%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            ++P  S  +FE+L L+PELLKGLY  MKFQKPSKIQ  +LP++L  P RN+IAQ+++G+GKT  F L MLSRVD  + A QA+C+ P+R LA Q LEV+++MGK T I S+  VP          K   + A +++GTPGT+
Sbjct:   72 NSPLYSVKSFEELGLAPELLKGLYA-MKFQKPSKIQERALPLLLYNPPRNMIAQSQSGTGKTAAFSLTMLSRVDVAVPATQAICLAPSR-LARQTLEVIQEMGKFTKIASQLIVPDS------YEKNKAINAHIIVGTPGTV 205          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_PICGU (ATP-dependent RNA helicase DBP5 OS=Pichia guilliermondii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.562e-30
Identity = 70/142 (49.30%), Postives = 95/142 (66.90%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            ++P  S  +FE+L LSPELLKGLY  MKF KPSKIQ  +LP++++ P +N+I Q+++G+GKT  F L MLSRVD N    Q +C+ PTRELA Q LEV+  MGK T +T++  VP        + K     A +V+GTPGT+
Sbjct:   85 NSPLYSVKSFEELGLSPELLKGLYA-MKFNKPSKIQEKALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDVNDPNTQCICLSPTRELARQTLEVITTMGKFTKVTTQLVVPQ------AMEKNQGTQAHIVVGTPGTL 219          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX19_DICDI (ATP-dependent RNA helicase ddx19 OS=Dictyostelium discoideum GN=helC PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.660e-29
Identity = 73/147 (49.66%), Postives = 97/147 (65.99%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI-----TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            ++P  S  TFE+L L PELLKG+Y  M + KPSKIQ  +LP+I+  P  NLIAQ+++G+GKT  F LGML+ VDP++ APQA+CI PT+ELA+Q  EV+ K+G+ + I      SE  VP + TN            QV+IGTPG I
Sbjct:   63 NSPLYSVKTFEELGLKPELLKGVYA-MGYNKPSKIQEAALPIIIQSP-NNLIAQSQSGTGKTAAFTLGMLNCVDPSINAPQAICISPTKELALQTFEVISKIGQFSNIKPLLYISEIEVPKNVTN------------QVIIGTPGKI 195          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_CRYNE (ATP-dependent RNA helicase DBP5 OS=Cryptococcus neoformans GN=DBP5 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.406e-28
Identity = 78/222 (35.14%), Postives = 117/222 (52.70%), Query Frame = 2
Query:  104 EPLPSTEPKRSWGDVAXXXXXXXXXXXXXXXXXXTANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGD--TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            EP PS      W D                       +S+       D++     E    N F  E + + ++    GD  +P  S  +F++LNL  +L+KG+ +   FQKPSKIQ  +LP++L+ P RNLI Q+++G+GKT  F L MLSRVDP +  PQA+CI P+RELA Q  EV+ ++G+ T + +  A+P         S+   +  Q++IGTPGT+
Sbjct:   65 EPAPSAPADNGWADAGASNGGSGANNNDGWFDAPVPPSSQPPKKEASDIQLQDDTEGLITNTFQVEVKLADLQ----GDPNSPLYSVQSFKELNLHEDLMKGI-IAAGFQKPSKIQEKALPLLLSNPPRNLIGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAPSRELARQIQEVIDQIGQFTQVGTFLAIPGS------WSRNSRIDKQILIGTPGTL 275          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DD19A_MOUSE (ATP-dependent RNA helicase DDX19A OS=Mus musculus GN=Ddx19a PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.090e-28
Identity = 69/147 (46.94%), Postives = 97/147 (65.99%), Query Frame = 2
Query:  341 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMS 778
            +P  S  +FE+L L P+LL+G+Y  M F +PSKIQ  +LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+P  + PQ LC+ PT ELA+Q  +V+ +MGK H  +    AV  +      + +   V+ Q+VIGTPGT+  W S
Sbjct:   85 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-----LERGQKVSEQIVIGTPGTVLDWCS 225          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_USTMA (ATP-dependent RNA helicase DBP5 OS=Ustilago maydis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.976e-28
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPG 757
            ++P  SA +FE L L   LLKG+Y  MK+QKPSKIQ  +LP++L  P +N+I Q+++G+GKT  F+L MLSR+D +L+ PQA+ + P+RELA Q ++V R M K T +T+   +P +      + +   +TAQ++IGTPG
Sbjct:   57 NSPLYSAKSFEALGLHENLLKGIYA-MKYQKPSKIQEKALPLLLQNPPKNMIGQSQSGTGKTAAFILTMLSRIDYDLQKPQAIALAPSRELARQIMDVARTMSKFTNVTTCLCLPDE------VKRGEKITAQLIIGTPG 189          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.111e-28
Identity = 67/148 (45.27%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMS 778
            ++P  S  +FE+L L P+LL+G+Y  M F +PSKIQ  +LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+P+ + PQ LC+ PT ELA+Q  +V+ +MGK +  +    AV  +      + +   ++ Q+VIGTPGT+  W S
Sbjct:   84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK-----LERGQKISEQIVIGTPGTVLDWCS 225          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DD19A_BOVIN (ATP-dependent RNA helicase DDX19A OS=Bos taurus GN=DDX19A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.190e-27
Identity = 67/148 (45.27%), Postives = 97/148 (65.54%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMS 778
            ++P  S  +FE+L L P+LL+G+Y  M F +PSKIQ  +LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+P  + PQ LC+ PT ELA+Q  +V+ +MGK H  +    AV  +      + +   ++  +VIGTPGT+  W S
Sbjct:   84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-----LERGQKISEHIVIGTPGTVLDWCS 225          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_DEBHA (ATP-dependent RNA helicase DBP5 OS=Debaryomyces hansenii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.190e-27
Identity = 76/189 (40.21%), Postives = 110/189 (58.20%), Query Frame = 2
Query:  209 ANTSEDKSTAELDVEGLTIDESKKV-NKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            A+T E K     DV+  T  E ++  +  +  + +  +K        ++P  S  +FE+L LS ELLKGLY  MKF KPSKIQ  +LP++++ P +N+I Q+++G+GKT  F L MLSRVD +    Q +C+ P RELA Q LEV+  M K T ITS+  VP        + +     A V++GTPGT+
Sbjct:   52 ASTEESKPA---DVKDATKSEEQEAESNLIKSSYEVKVKLADLQADPNSPLYSVKSFEELGLSSELLKGLYA-MKFNKPSKIQEKALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDESDPNTQCICLAPARELARQTLEVITTMSKFTKITSQLIVPD------AMQRGQSTCAHVLVGTPGTL 230          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
DBP5_YARLI3.952e-3139.90ATP-dependent RNA helicase DBP5 OS=Yarrowia lipoly... [more]
DBP5_ASHGO1.961e-3050.70ATP-dependent RNA helicase DBP5 OS=Ashbya gossypii... [more]
DBP5_PICGU2.562e-3049.30ATP-dependent RNA helicase DBP5 OS=Pichia guillier... [more]
DDX19_DICDI1.660e-2949.66ATP-dependent RNA helicase ddx19 OS=Dictyostelium ... [more]
DBP5_CRYNE1.406e-2835.14ATP-dependent RNA helicase DBP5 OS=Cryptococcus ne... [more]
DD19A_MOUSE4.090e-2846.94ATP-dependent RNA helicase DDX19A OS=Mus musculus ... [more]
DBP5_USTMA6.976e-2845.71ATP-dependent RNA helicase DBP5 OS=Ustilago maydis... [more]
DD19A_HUMAN9.111e-2845.27ATP-dependent RNA helicase DDX19A OS=Homo sapiens ... [more]
DD19A_BOVIN1.190e-2745.27ATP-dependent RNA helicase DDX19A OS=Bos taurus GN... [more]
DBP5_DEBHA1.190e-2740.21ATP-dependent RNA helicase DBP5 OS=Debaryomyces ha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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