CB290556
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_YARLI (ATP-dependent RNA helicase DBP5 OS=Yarrowia lipolytica GN=DBP5 PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.952e-31 Identity = 83/208 (39.90%), Postives = 117/208 (56.25%), Query Frame = 2 Query: 209 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGD-----------------------TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 A E K + DV+ ++ KKV K D+ ED+ ++ + +P SA FEDL L LLKGLY MKF KPSKIQ +LP++L+ P N+I Q+++G+GKT F L MLSRVDPNLKA Q +C+ P+RELA Q L+V+ +M K T IT+ VP + + VT+Q+++GTPG++ Sbjct: 26 AKVEEVKEDDKKDVKEELNEDDKKVAKEDDKKEDAKEESKEDAEENNLIQTEYEVRVKLADLQADPNSPLYSAKRFEDLGLDENLLKGLYA-MKFNKPSKIQEKALPLLLSDPPHNMIGQSQSGTGKTGAFSLTMLSRVDPNLKAVQCICLAPSRELARQTLDVVDEMKKFTDITTHLIVPEST------ERGQKVTSQILVGTPGSV 226
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_ASHGO (ATP-dependent RNA helicase DBP5 OS=Ashbya gossypii GN=DBP5 PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.961e-30 Identity = 72/142 (50.70%), Postives = 98/142 (69.01%), Query Frame = 2 Query: 338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 ++P S +FE+L L+PELLKGLY MKFQKPSKIQ +LP++L P RN+IAQ+++G+GKT F L MLSRVD + A QA+C+ P+R LA Q LEV+++MGK T I S+ VP K + A +++GTPGT+ Sbjct: 72 NSPLYSVKSFEELGLAPELLKGLYA-MKFQKPSKIQERALPLLLYNPPRNMIAQSQSGTGKTAAFSLTMLSRVDVAVPATQAICLAPSR-LARQTLEVIQEMGKFTKIASQLIVPDS------YEKNKAINAHIIVGTPGTV 205
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_PICGU (ATP-dependent RNA helicase DBP5 OS=Pichia guilliermondii GN=DBP5 PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.562e-30 Identity = 70/142 (49.30%), Postives = 95/142 (66.90%), Query Frame = 2 Query: 338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 ++P S +FE+L LSPELLKGLY MKF KPSKIQ +LP++++ P +N+I Q+++G+GKT F L MLSRVD N Q +C+ PTRELA Q LEV+ MGK T +T++ VP + K A +V+GTPGT+ Sbjct: 85 NSPLYSVKSFEELGLSPELLKGLYA-MKFNKPSKIQEKALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDVNDPNTQCICLSPTRELARQTLEVITTMGKFTKVTTQLVVPQ------AMEKNQGTQAHIVVGTPGTL 219
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX19_DICDI (ATP-dependent RNA helicase ddx19 OS=Dictyostelium discoideum GN=helC PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.660e-29 Identity = 73/147 (49.66%), Postives = 97/147 (65.99%), Query Frame = 2 Query: 338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI-----TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 ++P S TFE+L L PELLKG+Y M + KPSKIQ +LP+I+ P NLIAQ+++G+GKT F LGML+ VDP++ APQA+CI PT+ELA+Q EV+ K+G+ + I SE VP + TN QV+IGTPG I Sbjct: 63 NSPLYSVKTFEELGLKPELLKGVYA-MGYNKPSKIQEAALPIIIQSP-NNLIAQSQSGTGKTAAFTLGMLNCVDPSINAPQAICISPTKELALQTFEVISKIGQFSNIKPLLYISEIEVPKNVTN------------QVIIGTPGKI 195
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_CRYNE (ATP-dependent RNA helicase DBP5 OS=Cryptococcus neoformans GN=DBP5 PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.406e-28 Identity = 78/222 (35.14%), Postives = 117/222 (52.70%), Query Frame = 2 Query: 104 EPLPSTEPKRSWGDVAXXXXXXXXXXXXXXXXXXTANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGD--TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 EP PS W D +S+ D++ E N F E + + ++ GD +P S +F++LNL +L+KG+ + FQKPSKIQ +LP++L+ P RNLI Q+++G+GKT F L MLSRVDP + PQA+CI P+RELA Q EV+ ++G+ T + + A+P S+ + Q++IGTPGT+ Sbjct: 65 EPAPSAPADNGWADAGASNGGSGANNNDGWFDAPVPPSSQPPKKEASDIQLQDDTEGLITNTFQVEVKLADLQ----GDPNSPLYSVQSFKELNLHEDLMKGI-IAAGFQKPSKIQEKALPLLLSNPPRNLIGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAPSRELARQIQEVIDQIGQFTQVGTFLAIPGS------WSRNSRIDKQILIGTPGTL 275
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DD19A_MOUSE (ATP-dependent RNA helicase DDX19A OS=Mus musculus GN=Ddx19a PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.090e-28 Identity = 69/147 (46.94%), Postives = 97/147 (65.99%), Query Frame = 2 Query: 341 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMS 778 +P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+GKT FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV + + + V+ Q+VIGTPGT+ W S Sbjct: 85 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-----LERGQKVSEQIVIGTPGTVLDWCS 225
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_USTMA (ATP-dependent RNA helicase DBP5 OS=Ustilago maydis GN=DBP5 PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.976e-28 Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = 2 Query: 338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPG 757 ++P SA +FE L L LLKG+Y MK+QKPSKIQ +LP++L P +N+I Q+++G+GKT F+L MLSR+D +L+ PQA+ + P+RELA Q ++V R M K T +T+ +P + + + +TAQ++IGTPG Sbjct: 57 NSPLYSAKSFEALGLHENLLKGIYA-MKYQKPSKIQEKALPLLLQNPPKNMIGQSQSGTGKTAAFILTMLSRIDYDLQKPQAIALAPSRELARQIMDVARTMSKFTNVTTCLCLPDE------VKRGEKITAQLIIGTPG 189
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 9.111e-28 Identity = 67/148 (45.27%), Postives = 99/148 (66.89%), Query Frame = 2 Query: 338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMS 778 ++P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+GKT FVL MLSRV+P+ + PQ LC+ PT ELA+Q +V+ +MGK + + AV + + + ++ Q+VIGTPGT+ W S Sbjct: 84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK-----LERGQKISEQIVIGTPGTVLDWCS 225
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DD19A_BOVIN (ATP-dependent RNA helicase DDX19A OS=Bos taurus GN=DDX19A PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.190e-27 Identity = 67/148 (45.27%), Postives = 97/148 (65.54%), Query Frame = 2 Query: 338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMS 778 ++P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+GKT FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV + + + ++ +VIGTPGT+ W S Sbjct: 84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-----LERGQKISEHIVIGTPGTVLDWCS 225
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_DEBHA (ATP-dependent RNA helicase DBP5 OS=Debaryomyces hansenii GN=DBP5 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.190e-27 Identity = 76/189 (40.21%), Postives = 110/189 (58.20%), Query Frame = 2 Query: 209 ANTSEDKSTAELDVEGLTIDESKKV-NKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 A+T E K DV+ T E ++ + + + + +K ++P S +FE+L LS ELLKGLY MKF KPSKIQ +LP++++ P +N+I Q+++G+GKT F L MLSRVD + Q +C+ P RELA Q LEV+ M K T ITS+ VP + + A V++GTPGT+ Sbjct: 52 ASTEESKPA---DVKDATKSEEQEAESNLIKSSYEVKVKLADLQADPNSPLYSVKSFEELGLSSELLKGLYA-MKFNKPSKIQEKALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDESDPNTQCICLAPARELARQTLEVITTMSKFTKITSQLIVPD------AMQRGQSTCAHVLVGTPGTL 230 The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 259
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bpback to top |