CB290556
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.750e-16 Identity = 51/133 (38.35%), Postives = 83/133 (62.41%), Query Frame = 2 Query: 365 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 F+D+NL ELLKG+Y F++PS IQ ++ I+ +++AQA++G+GKT F + L R+D ++KAPQAL + PTRELA+Q +V+ + H + + T++V ++ AQ+V+GTPG + Sbjct: 25 FDDMNLKDELLKGVY-GYGFEEPSAIQQRAILPIVEE--HDVLAQAQSGTGKTGTFSIAALQRIDSSIKAPQALILAPTRELALQIQKVVIALAFHMDVKVHACI--GGTSFVEDTEGLK-DAQIVVGTPGRV 151
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.591e-16 Identity = 51/145 (35.17%), Postives = 85/145 (58.62%), Query Frame = 2 Query: 332 TGDTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 T +T Y + +F+DLNL P +++G++ ++ PS IQ ++ I R+++AQA++G+GKT F + L R+D NLKA QAL + PTRELA+Q V+ +G + +T ++ T+ + Q+V+GTPG + Sbjct: 12 TIETNYDNVVYSFDDLNLKPNIVRGIF-GYGYESPSAIQQRAILPITEG--RDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYLNVTVHASI--GGTSMKDDIEAFKSGVQIVVGTPGRV 151
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 3.591e-16 Identity = 52/134 (38.81%), Postives = 76/134 (56.72%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 TFE +NL PELLKG+Y F+ PS IQ+ ++ I+ R+ IAQA++G+GKT F +G+LS +D K QAL + PTRELA Q V+ +G + + S + T K+ ++ GTPG + Sbjct: 25 TFESMNLKPELLKGIY-NYGFEAPSAIQSRAIMQIIRG--RDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACI--GGTQVGEDVKKLQQGQHIISGTPGRV 153
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16 Identity = 51/134 (38.06%), Postives = 80/134 (59.70%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 +F+ +NL PELL+G+Y F++PS IQ ++ ++ ++IAQA++G+GKT F + +L ++DPN+K QAL + PTRELA Q +V+ +G + EC T+ K QVV+GTPG + Sbjct: 26 SFDTMNLKPELLRGVYA-YGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNV--ECHACIGGTSVRDDMKALQDGPQVVVGTPGRV 154
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16 Identity = 51/134 (38.06%), Postives = 80/134 (59.70%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 +F+ +NL PELL+G+Y F++PS IQ ++ ++ ++IAQA++G+GKT F + +L ++DPN+K QAL + PTRELA Q +V+ +G + EC T+ K QVV+GTPG + Sbjct: 26 SFDTMNLKPELLRGVYA-YGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNV--ECHACIGGTSVRDDMKALQDGPQVVVGTPGRV 154
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16 Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 2 Query: 359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTI 763 TTF DL L +L+ L ++ ++KPS IQA +P +L R+++ A+ GSGKT F L +L +DP LKAPQ L + PTRELA+Q E + KH + A+ V + ++ P Q+V+GTPG + Sbjct: 6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRL 136
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16 Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 2 Query: 359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTI 763 TTF DL L +L+ L ++ ++KPS IQA +P +L R+++ A+ GSGKT F L +L +DP LKAPQ L + PTRELA+Q E + KH + A+ V + ++ P Q+V+GTPG + Sbjct: 6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRL 136
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16 Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 2 Query: 359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTI 763 TTF DL L +L+ L ++ ++KPS IQA +P +L R+++ A+ GSGKT F L +L +DP LKAPQ L + PTRELA+Q E + KH + A+ V + ++ P Q+V+GTPG + Sbjct: 6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRL 136
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3) HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16 Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 2 Query: 359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTI 763 TTF DL L +L+ L ++ ++KPS IQA +P +L R+++ A+ GSGKT F L +L +DP LKAPQ L + PTRELA+Q E + KH + A+ V + ++ P Q+V+GTPG + Sbjct: 6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRL 136
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_CHAGB (ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum GN=TIF1 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16 Identity = 54/157 (34.39%), Postives = 87/157 (55.41%), Query Frame = 2 Query: 302 AEDSSIKTVTTGDTPYT---SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 A D ++ V G + +F+D+NL ELL+G+Y F++PS IQ ++ ++ ++IAQA++G+GKT F + +L ++DP +K+ QAL + PTRELA Q +V+ +G I EC T+ K QV++GTPG + Sbjct: 2 ATDKGLEDVPEGQIESNYDETVDSFDDMNLKSELLRGIYA-YGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVLQKIDPTVKSCQALILAPTRELAQQIQKVVIAIGDFMNI--ECHACIGGTSVRDDMKALQDGPQVIVGTPGRV 153 The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 259
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bpback to top |