CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.750e-16
Identity = 51/133 (38.35%), Postives = 83/133 (62.41%), Query Frame = 2
Query:  365 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            F+D+NL  ELLKG+Y    F++PS IQ  ++  I+     +++AQA++G+GKT  F +  L R+D ++KAPQAL + PTRELA+Q  +V+  +  H  +     +    T++V  ++     AQ+V+GTPG +
Sbjct:   25 FDDMNLKDELLKGVY-GYGFEEPSAIQQRAILPIVEE--HDVLAQAQSGTGKTGTFSIAALQRIDSSIKAPQALILAPTRELALQIQKVVIALAFHMDVKVHACI--GGTSFVEDTEGLK-DAQIVVGTPGRV 151          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.591e-16
Identity = 51/145 (35.17%), Postives = 85/145 (58.62%), Query Frame = 2
Query:  332 TGDTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T +T Y +   +F+DLNL P +++G++    ++ PS IQ  ++  I     R+++AQA++G+GKT  F +  L R+D NLKA QAL + PTRELA+Q   V+  +G +  +T   ++    T+     +      Q+V+GTPG +
Sbjct:   12 TIETNYDNVVYSFDDLNLKPNIVRGIF-GYGYESPSAIQQRAILPITEG--RDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYLNVTVHASI--GGTSMKDDIEAFKSGVQIVVGTPGRV 151          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.591e-16
Identity = 52/134 (38.81%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TFE +NL PELLKG+Y    F+ PS IQ+ ++  I+    R+ IAQA++G+GKT  F +G+LS +D   K  QAL + PTRELA Q   V+  +G +  + S   +    T      K+      ++ GTPG +
Sbjct:   25 TFESMNLKPELLKGIY-NYGFEAPSAIQSRAIMQIIRG--RDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACI--GGTQVGEDVKKLQQGQHIISGTPGRV 153          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16
Identity = 51/134 (38.06%), Postives = 80/134 (59.70%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +F+ +NL PELL+G+Y    F++PS IQ  ++  ++     ++IAQA++G+GKT  F + +L ++DPN+K  QAL + PTRELA Q  +V+  +G    +  EC      T+     K      QVV+GTPG +
Sbjct:   26 SFDTMNLKPELLRGVYA-YGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNV--ECHACIGGTSVRDDMKALQDGPQVVVGTPGRV 154          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16
Identity = 51/134 (38.06%), Postives = 80/134 (59.70%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +F+ +NL PELL+G+Y    F++PS IQ  ++  ++     ++IAQA++G+GKT  F + +L ++DPN+K  QAL + PTRELA Q  +V+  +G    +  EC      T+     K      QVV+GTPG +
Sbjct:   26 SFDTMNLKPELLRGVYA-YGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNV--ECHACIGGTSVRDDMKALQDGPQVVVGTPGRV 154          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16
Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTI 763
            TTF DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L  +DP LKAPQ L + PTRELA+Q  E +    KH    +  A+       V +   ++ P   Q+V+GTPG +
Sbjct:    6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRL 136          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16
Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTI 763
            TTF DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L  +DP LKAPQ L + PTRELA+Q  E +    KH    +  A+       V +   ++ P   Q+V+GTPG +
Sbjct:    6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRL 136          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16
Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTI 763
            TTF DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L  +DP LKAPQ L + PTRELA+Q  E +    KH    +  A+       V +   ++ P   Q+V+GTPG +
Sbjct:    6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRL 136          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16
Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTI 763
            TTF DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L  +DP LKAPQ L + PTRELA+Q  E +    KH    +  A+       V +   ++ P   Q+V+GTPG +
Sbjct:    6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRL 136          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_CHAGB (ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 54/157 (34.39%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  302 AEDSSIKTVTTGDTPYT---SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            A D  ++ V  G        +  +F+D+NL  ELL+G+Y    F++PS IQ  ++  ++     ++IAQA++G+GKT  F + +L ++DP +K+ QAL + PTRELA Q  +V+  +G    I  EC      T+     K      QV++GTPG +
Sbjct:    2 ATDKGLEDVPEGQIESNYDETVDSFDDMNLKSELLRGIYA-YGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVLQKIDPTVKSCQALILAPTRELAQQIQKVVIAIGDFMNI--ECHACIGGTSVRDDMKALQDGPQVIVGTPGRV 153          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
IF4A_VANPO2.750e-1638.35ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
IF4A_PICGU3.591e-1635.17ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
FAL1_PICGU3.591e-1638.81ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]
IF4A_SCLS14.690e-1638.06ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]
IF4A_BOTFB4.690e-1638.06ATP-dependent RNA helicase eIF4A OS=Botryotinia fu... [more]
DEAD_SHIFL4.690e-1638.69Cold-shock DEAD box protein A OS=Shigella flexneri... [more]
DEAD_ECOLI4.690e-1638.69Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECOL64.690e-1638.69Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECO574.690e-1638.69Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
IF4A_CHAGB6.126e-1634.39ATP-dependent RNA helicase eIF4A OS=Chaetomium glo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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