CB290556
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16 Identity = 48/144 (33.33%), Postives = 81/144 (56.25%), Query Frame = 2 Query: 332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 T D T F+DL+L +LL+G++ E + KPS IQ ++P+ L R+++A+A+NG+GKT F++ L + DP Q L + PTRELA+Q +V +++GK+ + + T T+ R +++ TPG + Sbjct: 40 TEDVTATEGNDFDDLHLKRDLLRGIF-EKGYVKPSPIQEKAIPIALAG--RDIMARAKNGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNV--QVMASTGGTSLKDDIMRLYNPVHILVATPGRV 178
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16 Identity = 60/161 (37.27%), Postives = 90/161 (55.90%), Query Frame = 2 Query: 284 NKFLDEAEDSSIKTVTTGDTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 +K L+E D+ I ++ Y T +F+ +NL ELL+G+Y F++PS IQ ++ ++ ++IAQA++G+GKT F + L +VD NLKA QAL + PTRELA Q +V+ +G + EC TN K QVV+GTPG + Sbjct: 5 DKGLEEIPDNQI------ESNYDEITDSFDAMNLRAELLRGVYA-YGFERPSAIQQRAIMPVIKGS--DVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSV--ECHACIGGTNVREDIKALNDGPQVVVGTPGRV 154
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_DROME (Putative ATP-dependent RNA helicase me31b OS=Drosophila melanogaster GN=me31B PE=1 SV=3) HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16 Identity = 57/175 (32.57%), Postives = 93/175 (53.14%), Query Frame = 2 Query: 239 ELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 +L + G T D+ +K +D+ KT DT FE+ L ELL G++ E +++PS IQ ++P+ L+ ++++A+A+NG+GKT + + +L ++DP QAL + PTRELA+Q ++ ++ KH I V T T R Q++I TPG I Sbjct: 21 DLQIAGNTSDDMGWKSKLKLPPKDNRFKTTDVTDT---RGNEFEEFCLKRELLMGIF-EKGWERPSPIQEAAIPIALSG--KDVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVPTRELALQTSQICIELAKHLDI--RVMVTTGGTILKDDILRIYQKVQLIIATPGRI 187
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15 Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTI 763 +F+D+NLS LL+G+Y F+KPS IQ + LP I ++IAQA++G+GKT F + +L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K +++GTPG + Sbjct: 25 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 154
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15 Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTI 763 +F+D+NLS LL+G+Y F+KPS IQ + LP I ++IAQA++G+GKT F + +L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K +++GTPG + Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 162
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15 Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTI 763 +F+D+NLS LL+G+Y F+KPS IQ + LP I ++IAQA++G+GKT F + +L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K +++GTPG + Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 162
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15 Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTI 763 +F+D+NLS LL+G+Y F+KPS IQ + LP I ++IAQA++G+GKT F + +L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K +++GTPG + Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 162
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15 Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTI 763 +F+D+NLS LL+G+Y F+KPS IQ + LP I ++IAQA++G+GKT F + +L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K +++GTPG + Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 162
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15 Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTI 763 +F+D+NLS LL+G+Y F+KPS IQ + LP I ++IAQA++G+GKT F + +L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K +++GTPG + Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 162
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.328e-15 Identity = 47/134 (35.07%), Postives = 79/134 (58.96%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 TF+DLNL P +++G++ ++ PS IQ ++ I R+++AQA++G+GKT F + L R+D N K+ QAL + PTRELA+Q V+ +G + +T ++ T+ + Q+V+GTPG + Sbjct: 24 TFDDLNLKPNIVRGIF-GYGYESPSAIQQRAILPITEG--RDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYLNVTVHASI--GGTSMKDDIEAFKSGVQIVVGTPGRV 152 The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 259
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bpback to top |