CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 48/144 (33.33%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    F+DL+L  +LL+G++ E  + KPS IQ  ++P+ L    R+++A+A+NG+GKT  F++  L + DP     Q L + PTRELA+Q  +V +++GK+  +  +    T  T+      R      +++ TPG +
Sbjct:   40 TEDVTATEGNDFDDLHLKRDLLRGIF-EKGYVKPSPIQEKAIPIALAG--RDIMARAKNGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNV--QVMASTGGTSLKDDIMRLYNPVHILVATPGRV 178          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 60/161 (37.27%), Postives = 90/161 (55.90%), Query Frame = 2
Query:  284 NKFLDEAEDSSIKTVTTGDTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +K L+E  D+ I      ++ Y   T +F+ +NL  ELL+G+Y    F++PS IQ  ++  ++     ++IAQA++G+GKT  F +  L +VD NLKA QAL + PTRELA Q  +V+  +G    +  EC      TN     K      QVV+GTPG +
Sbjct:    5 DKGLEEIPDNQI------ESNYDEITDSFDAMNLRAELLRGVYA-YGFERPSAIQQRAIMPVIKGS--DVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSV--ECHACIGGTNVREDIKALNDGPQVVVGTPGRV 154          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_DROME (Putative ATP-dependent RNA helicase me31b OS=Drosophila melanogaster GN=me31B PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 57/175 (32.57%), Postives = 93/175 (53.14%), Query Frame = 2
Query:  239 ELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +L + G T D+    +K     +D+  KT    DT       FE+  L  ELL G++ E  +++PS IQ  ++P+ L+   ++++A+A+NG+GKT  + + +L ++DP     QAL + PTRELA+Q  ++  ++ KH  I     V T  T       R     Q++I TPG I
Sbjct:   21 DLQIAGNTSDDMGWKSKLKLPPKDNRFKTTDVTDT---RGNEFEEFCLKRELLMGIF-EKGWERPSPIQEAAIPIALSG--KDVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVPTRELALQTSQICIELAKHLDI--RVMVTTGGTILKDDILRIYQKVQLIIATPGRI 187          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTI 763
            +F+D+NLS  LL+G+Y    F+KPS IQ  + LP I      ++IAQA++G+GKT  F + +L +++ +LKA QAL + PTRELA Q  +V+  +G + G  + C      TN    + K       +++GTPG +
Sbjct:   25 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 154          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTI 763
            +F+D+NLS  LL+G+Y    F+KPS IQ  + LP I      ++IAQA++G+GKT  F + +L +++ +LKA QAL + PTRELA Q  +V+  +G + G  + C      TN    + K       +++GTPG +
Sbjct:   33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 162          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTI 763
            +F+D+NLS  LL+G+Y    F+KPS IQ  + LP I      ++IAQA++G+GKT  F + +L +++ +LKA QAL + PTRELA Q  +V+  +G + G  + C      TN    + K       +++GTPG +
Sbjct:   33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 162          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTI 763
            +F+D+NLS  LL+G+Y    F+KPS IQ  + LP I      ++IAQA++G+GKT  F + +L +++ +LKA QAL + PTRELA Q  +V+  +G + G  + C      TN    + K       +++GTPG +
Sbjct:   33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 162          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTI 763
            +F+D+NLS  LL+G+Y    F+KPS IQ  + LP I      ++IAQA++G+GKT  F + +L +++ +LKA QAL + PTRELA Q  +V+  +G + G  + C      TN    + K       +++GTPG +
Sbjct:   33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 162          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTI 763
            +F+D+NLS  LL+G+Y    F+KPS IQ  + LP I      ++IAQA++G+GKT  F + +L +++ +LKA QAL + PTRELA Q  +V+  +G + G  + C      TN    + K       +++GTPG +
Sbjct:   33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 162          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.328e-15
Identity = 47/134 (35.07%), Postives = 79/134 (58.96%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TF+DLNL P +++G++    ++ PS IQ  ++  I     R+++AQA++G+GKT  F +  L R+D N K+ QAL + PTRELA+Q   V+  +G +  +T   ++    T+     +      Q+V+GTPG +
Sbjct:   24 TFDDLNLKPNIVRGIF-GYGYESPSAIQQRAILPITEG--RDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYLNVTVHASI--GGTSMKDDIEAFKSGVQIVVGTPGRV 152          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
DDX6_DICDI6.126e-1633.33Probable ATP-dependent RNA helicase ddx6 OS=Dictyo... [more]
IF4A_COCIM8.000e-1637.27ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]
DDX6_DROME8.000e-1632.57Putative ATP-dependent RNA helicase me31b OS=Droso... [more]
IF4A1_RABIT1.782e-1538.24Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
IF4A1_PANTR1.782e-1538.24Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
IF4A1_MOUSE1.782e-1538.24Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_MACFA1.782e-1538.24Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN1.782e-1538.24Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN1.782e-1538.24Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
IF4A_DEBHA2.328e-1535.07ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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