CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.328e-15
Identity = 50/136 (36.76%), Postives = 78/136 (57.35%), Query Frame = 2
Query:  356 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            ATTF+ + L  +LL+G+Y    F+KPS IQ  ++  I+    R++IAQA++G+GKT  F + ML  +D  L+  QAL + PTRELAIQ   V+  +G +  +  +C      T+     ++      +V GTPG +
Sbjct:   23 ATTFDAMGLKEDLLRGIYA-YNFEKPSAIQQRAILPIIRG--RDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLNV--QCHACIGGTSVGEDIRKLDYGQHIVSGTPGRV 153          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.040e-15
Identity = 49/133 (36.84%), Postives = 79/133 (59.40%), Query Frame = 2
Query:  365 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            F+DLNL P +++G++    ++ PS IQ  ++  I     R+++AQA++G+GKT  F +  L R+D N K+ QAL + PTRELA+Q   V+  +G +  +T   ++   S      + R  V  QVV+GTPG +
Sbjct:   25 FDDLNLKPNIVRGIF-GYGYETPSAIQQRAILPITEG--RDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMQDDIEAFRSGV--QVVVGTPGRV 152          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.040e-15
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 2
Query:  305 EDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            ED  +K  T+     +   TFE +NL  +LL+G+Y    F+ PS IQ+ ++  I++    ++IAQA++G+GKT  F +GML  +D   K  QAL + PTRELA Q  +V+  +G +  + S  A+    T    +++      QVV GTPG +
Sbjct:    7 EDKKLKFKTSKKLKISP--TFESMNLKDDLLRGIY-GYGFEAPSAIQSRAITQIISGT--DVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYMNVQS-YAMTGGKTMKDDLNRMQKNGCQVVSGTPGRV 153          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.971e-15
Identity = 49/141 (34.75%), Postives = 82/141 (58.16%), Query Frame = 2
Query:  341 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPG 757
            +P  SA TF DL + P +L+ +  ++ ++ P+ IQA ++P ++     +++  A+ G+GKT  F + MLS++D   K PQAL + PTRELA+Q  E   + G +    +   +   S+  V ++  +R    AQVV+GTPG
Sbjct:    7 SPAASAATFADLQIHPRVLRAIG-DVGYESPTAIQAATIPALMAGS--DVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR---GAQVVVGTPG 141          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_MAGGR (ATP-dependent RNA helicase eIF4A OS=Magnaporthe grisea GN=TIF1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.186e-15
Identity = 50/134 (37.31%), Postives = 79/134 (58.96%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +F+++NL  ELL+G+Y    F++PS IQ  ++  ++     ++IAQA++G+GKT  F + +L ++D N+K  QAL + PTRELA Q  +V+  +G    I  EC      T+     K      QVV+GTPG +
Sbjct:   24 SFDEMNLKSELLRGIYA-YGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTSVRDDMKALQDGPQVVVGTPGRV 152          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.186e-15
Identity = 47/134 (35.07%), Postives = 80/134 (59.70%), Query Frame = 2
Query:  365 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAV-PTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            F+DLNL P +++G++    ++ PS IQ  ++  I     R+++AQA++G+GKT  F +  L R+D N K+ QAL + PTRELA+Q   V+  +G +  +T   ++  T  ++ +   K      Q+V+GTPG +
Sbjct:   25 FDDLNLKPNIVRGIF-GYGYETPSAIQQRAILPITEG--RDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMSDDIEAFKS---GVQIVVGTPGRV 152          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_ASPOR (ATP-dependent RNA helicase eIF4A OS=Aspergillus oryzae GN=tif1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.186e-15
Identity = 54/143 (37.76%), Postives = 81/143 (56.64%), Query Frame = 2
Query:  338 DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +T Y   T +F+ + L PELL+G+Y    F++PS IQ  ++  I+     ++IAQA++G+GKT  F +  L ++DPN+K  QAL + PTRELA Q  +V+  +G    IT  C      T      K      +VV+GTPG +
Sbjct:   40 ETNYDEITDSFDAMELKPELLRGVYA-YGFERPSAIQQRAIKPIIKGS--DVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIT--CHACIGGTAVREDMKALGEGPEVVVGTPGRV 177          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.186e-15
Identity = 49/150 (32.67%), Postives = 87/150 (58.00%), Query Frame = 2
Query:  314 SIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +++  T+ D    + ++FE++NL  +LL+G+Y    ++ PS +Q+ ++  I     R++IAQA++G+GKT  F +G+L  +D +++  QAL + PTRELA+Q   V+  +G H  +  +C      T+     K+      VV GTPG +
Sbjct:    8 NVELTTSEDV--NAVSSFEEMNLKEDLLRGIYA-YGYETPSAVQSRAIIQICKG--RDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNV--QCHACIGGTSVGNDIKKLDYGQHVVSGTPGRV 150          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_COCIM (ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis GN=FAL1 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.186e-15
Identity = 54/156 (34.62%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  296 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            D   D  I+  T+ +   T A TF+D++L   LL+G+Y    F+ PS IQ+ ++  I     R+ IAQA++G+GKT  F + +L  +D  L+  QAL + PTRELA Q   V+  +G +  +  +C      TN     ++      VV GTPG +
Sbjct:    6 DRTADERIEFTTSKEV--TVAPTFDDMHLKENLLRGIYA-YGFESPSAIQSRAIVQICKG--RDTIAQAQSGTGKTATFAISILQVIDTALRETQALVLSPTRELATQIQNVIMAVGDYMNV--QCHACIGGTNVGDDIRKLDHGQHVVSGTPGRV 154          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 2
Query:  359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T+F+DL L  ELL+G+Y    F+ PS IQ  ++  ++     +++AQA++G+GKT  F +  L  +D  +K PQAL I PTRELA Q  +V+   G++  I  EC      T+     +       V++GTPG I
Sbjct:   22 TSFDDLGLKDELLRGIY-GYGFENPSSIQQRAILPVIKG--NDVLAQAQSGTGKTATFSISALQNIDEKIKKPQALIIAPTRELAHQIQKVVLAFGEYMKI--ECHACIGGTSVAEDIRVIQEGVHVIVGTPGRI 151          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
FAL1_USTMA2.328e-1536.76ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
IF4A_PICST3.040e-1536.84ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
FAL1_VANPO3.040e-1535.95ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
DEAD_MYCTU3.971e-1534.75Cold-shock DEAD box protein A homolog OS=Mycobacte... [more]
IF4A_MAGGR5.186e-1537.31ATP-dependent RNA helicase eIF4A OS=Magnaporthe gr... [more]
IF4A_LODEL5.186e-1535.07ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
IF4A_ASPOR5.186e-1537.76ATP-dependent RNA helicase eIF4A OS=Aspergillus or... [more]
FAL1_SCHPO5.186e-1532.67ATP-dependent RNA helicase fal1 OS=Schizosaccharom... [more]
FAL1_COCIM5.186e-1534.62ATP-dependent RNA helicase FAL1 OS=Coccidioides im... [more]
IF4A_YARLI6.773e-1537.04ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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