CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.668e-13
Identity = 52/139 (37.41%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP----TDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TTF +L LS  LL+ +   M F++ + IQA ++P  L    +++I QA+ G+GKT  F L +L +VD + ++ Q + I PTRELAIQ  E L K+GKH  +     +P     D    +   K+ P    +++GTPG I
Sbjct:    2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVR---ILPIYGGQDINRQIRALKKHP---HIIVGTPGRI 131          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.668e-13
Identity = 52/139 (37.41%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP----TDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TTF +L LS  LL+ +   M F++ + IQA ++P  L    +++I QA+ G+GKT  F L +L +VD + ++ Q + I PTRELAIQ  E L K+GKH  +     +P     D    +   K+ P    +++GTPG I
Sbjct:    2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVR---ILPIYGGQDINRQIRALKKHP---HIIVGTPGRI 131          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.668e-13
Identity = 52/139 (37.41%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP----TDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TTF +L LS  LL+ +   M F++ + IQA ++P  L    +++I QA+ G+GKT  F L +L +VD + ++ Q + I PTRELAIQ  E L K+GKH  +     +P     D    +   K+ P    +++GTPG I
Sbjct:    2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVR---ILPIYGGQDINRQIRALKKHP---HIIVGTPGRI 131          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.668e-13
Identity = 52/139 (37.41%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP----TDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TTF +L LS  LL+ +   M F++ + IQA ++P  L    +++I QA+ G+GKT  F L +L +VD + ++ Q + I PTRELAIQ  E L K+GKH  +     +P     D    +   K+ P    +++GTPG I
Sbjct:    2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVR---ILPIYGGQDINRQIRALKKHP---HIIVGTPGRI 131          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.179e-13
Identity = 49/159 (30.82%), Postives = 87/159 (54.72%), Query Frame = 2
Query:  287 KFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + + E + + ++  T+ +   T   TF+ + L  +LL+G+Y    F+KPS IQ  ++  I+    R++IAQ+++G+GKT  F + +L  +D  ++  QAL + PTRELA+Q  + L  +G +  +  +C      TN     ++      VV GTPG +
Sbjct:   15 RLMKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRV 166          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A3_CHICK (Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.179e-13
Identity = 49/159 (30.82%), Postives = 87/159 (54.72%), Query Frame = 2
Query:  287 KFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + + E + + ++  T+ +   T   TF+ + L  +LL+G+Y    F+KPS IQ  ++  I+    R++IAQ+++G+GKT  F + +L  +D  ++  QAL + PTRELA+Q  + L  +G +  +  +C      TN     ++      VV GTPG +
Sbjct:   17 RIMKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRV 168          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.846e-13
Identity = 50/135 (37.04%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +TF  L L+P +++ L  EM + KPS IQA  +P++L    R+++  A+ GSGKT  F L +L  ++ NLKAPQ L + PTRELA+Q  E      K+  I            Y    +      Q+V+GTPG +
Sbjct:    6 STFSFLGLNPFIIQSLN-EMGYVKPSPIQASCIPLLLEG--RDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYM-IGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRL 136          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.716e-13
Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYR--NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH--TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +F+D+ L   LL+G+Y    F+KPS IQ  ++     P  R  ++IAQA++G+GKT  F +G+L R+D      Q L + PTRELA+Q  EV+ ++G+    G +S CA     T      ++      V +GTPG +
Sbjct:   27 SFDDMPLHQNLLRGIYSH-GFEKPSSIQQRAI----VPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELAMQTAEVITRIGEFLAEGSSSFCATFVGGTRVQDDYRKLQSGTIVAVGTPGRV 159          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH5_ARATH (DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana GN=RH5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.854e-13
Identity = 62/186 (33.33%), Postives = 87/186 (46.77%), Query Frame = 2
Query:  263 IDESKKVNKFLDEAEDSSIKTVTTG----DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA---------PQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTA-----QVVIGTPGTIK 766
            + E K   + L E E    K V TG    +  Y +  TF + NL   +L        F+KPS IQ+ + P +L    R+LI  A+ GSGKT  F +  +  V    K          P  L + PTRELA+Q  +VLR+ G+  G+ S C        Y   SK P ++A      +VIGTPG ++
Sbjct:   80 VPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT---FEKPSPIQSHTWPFLLDG--RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICV-------YGGSSKGPQISAIRSGVDIVIGTPGRLR 253          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.854e-13
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TFE + L  ELL+G++    F+KPS IQ  ++  I+    R+ IAQA++G+GKT  F +G L  V+ N+++PQ L + PTRELA Q  +V   + +   I     V     N     K+      +V GTPG +
Sbjct:   33 TFESMGLREELLRGIF-NYGFEKPSAIQQRAILPIIKG--RDTIAQAQSGTGKTATFSIGALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACV--GGKNLSDDVKKLETGVHIVSGTPGRV 161          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
CSHA_BACCR1.668e-1337.41DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACC11.668e-1337.41DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAN1.668e-1337.41DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAH1.668e-1337.41DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
IF4A3_TAEGU2.179e-1330.82Eukaryotic initiation factor 4A-III OS=Taeniopygia... [more]
IF4A3_CHICK2.179e-1330.82Eukaryotic initiation factor 4A-III OS=Gallus gall... [more]
DEAD_BUCAI2.846e-1337.04Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
IF4A_TRYBB3.716e-1336.23Probable eukaryotic initiation factor 4A OS=Trypan... [more]
RH5_ARATH4.854e-1333.33DEAD-box ATP-dependent RNA helicase 5 OS=Arabidops... [more]
IF4A_DICDI4.854e-1336.57Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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