CB290556
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.668e-13 Identity = 52/139 (37.41%), Postives = 79/139 (56.83%), Query Frame = 2 Query: 359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP----TDSTNYVPISKRPPVTAQVVIGTPGTI 763 TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L +L +VD + ++ Q + I PTRELAIQ E L K+GKH + +P D + K+ P +++GTPG I Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVR---ILPIYGGQDINRQIRALKKHP---HIIVGTPGRI 131
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.668e-13 Identity = 52/139 (37.41%), Postives = 79/139 (56.83%), Query Frame = 2 Query: 359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP----TDSTNYVPISKRPPVTAQVVIGTPGTI 763 TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L +L +VD + ++ Q + I PTRELAIQ E L K+GKH + +P D + K+ P +++GTPG I Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVR---ILPIYGGQDINRQIRALKKHP---HIIVGTPGRI 131
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.668e-13 Identity = 52/139 (37.41%), Postives = 79/139 (56.83%), Query Frame = 2 Query: 359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP----TDSTNYVPISKRPPVTAQVVIGTPGTI 763 TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L +L +VD + ++ Q + I PTRELAIQ E L K+GKH + +P D + K+ P +++GTPG I Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVR---ILPIYGGQDINRQIRALKKHP---HIIVGTPGRI 131
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.668e-13 Identity = 52/139 (37.41%), Postives = 79/139 (56.83%), Query Frame = 2 Query: 359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP----TDSTNYVPISKRPPVTAQVVIGTPGTI 763 TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L +L +VD + ++ Q + I PTRELAIQ E L K+GKH + +P D + K+ P +++GTPG I Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVR---ILPIYGGQDINRQIRALKKHP---HIIVGTPGRI 131
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.179e-13 Identity = 49/159 (30.82%), Postives = 87/159 (54.72%), Query Frame = 2 Query: 287 KFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 + + E + + ++ T+ + T TF+ + L +LL+G+Y F+KPS IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA+Q + L +G + + +C TN ++ VV GTPG + Sbjct: 15 RLMKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRV 166
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A3_CHICK (Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.179e-13 Identity = 49/159 (30.82%), Postives = 87/159 (54.72%), Query Frame = 2 Query: 287 KFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 + + E + + ++ T+ + T TF+ + L +LL+G+Y F+KPS IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA+Q + L +G + + +C TN ++ VV GTPG + Sbjct: 17 RIMKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRV 168
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.846e-13 Identity = 50/135 (37.04%), Postives = 73/135 (54.07%), Query Frame = 2 Query: 359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 +TF L L+P +++ L EM + KPS IQA +P++L R+++ A+ GSGKT F L +L ++ NLKAPQ L + PTRELA+Q E K+ I Y + Q+V+GTPG + Sbjct: 6 STFSFLGLNPFIIQSLN-EMGYVKPSPIQASCIPLLLEG--RDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYM-IGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRL 136
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.716e-13 Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYR--NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH--TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 +F+D+ L LL+G+Y F+KPS IQ ++ P R ++IAQA++G+GKT F +G+L R+D Q L + PTRELA+Q EV+ ++G+ G +S CA T ++ V +GTPG + Sbjct: 27 SFDDMPLHQNLLRGIYSH-GFEKPSSIQQRAI----VPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELAMQTAEVITRIGEFLAEGSSSFCATFVGGTRVQDDYRKLQSGTIVAVGTPGRV 159
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH5_ARATH (DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana GN=RH5 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.854e-13 Identity = 62/186 (33.33%), Postives = 87/186 (46.77%), Query Frame = 2 Query: 263 IDESKKVNKFLDEAEDSSIKTVTTG----DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA---------PQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTA-----QVVIGTPGTIK 766 + E K + L E E K V TG + Y + TF + NL +L F+KPS IQ+ + P +L R+LI A+ GSGKT F + + V K P L + PTRELA+Q +VLR+ G+ G+ S C Y SK P ++A +VIGTPG ++ Sbjct: 80 VPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT---FEKPSPIQSHTWPFLLDG--RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICV-------YGGSSKGPQISAIRSGVDIVIGTPGRLR 253
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.854e-13 Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 TFE + L ELL+G++ F+KPS IQ ++ I+ R+ IAQA++G+GKT F +G L V+ N+++PQ L + PTRELA Q +V + + I V N K+ +V GTPG + Sbjct: 33 TFESMGLREELLRGIF-NYGFEKPSAIQQRAILPIIKG--RDTIAQAQSGTGKTATFSIGALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACV--GGKNLSDDVKKLETGVHIVSGTPGRV 161 The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 259
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bpback to top |