CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX25_XENLA (ATP-dependent RNA helicase DDX25 OS=Xenopus laevis GN=deadsouth PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.030e-27
Identity = 70/145 (48.28%), Postives = 95/145 (65.52%), Query Frame = 2
Query:  341 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKW 772
            +P  S  +FE+L+L  ELL+G+Y  M F +PSKIQ  +LPM+L  P +NLIAQ+++G+GKT  FVL MLSRVD N K PQ +C+ PT ELA+Q  +V+ +MGK   GI    A+  +        K   + AQ+VIGTPGT+  W
Sbjct:   91 SPLFSVKSFEELHLKNELLRGIYA-MGFNRPSKIQENALPMMLADPPQNLIAQSQSGTGKTAAFVLAMLSRVDANKKYPQCICLSPTFELALQTGKVVEEMGKFCAGIEVIYALRGNRP-----GKGSRLEAQIVIGTPGTVLDW 229          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX25_MOUSE (ATP-dependent RNA helicase DDX25 OS=Mus musculus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.522e-27
Identity = 77/187 (41.18%), Postives = 105/187 (56.15%), Query Frame = 2
Query:  218 SEDKSTAELDVEGLTIDE--SKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKW 772
            +ED    E DV  L  +   +K + + L E+            +P  S  TFE+L L  ELLKG+Y  M F +PSKIQ ++LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+     PQ LC+ PT ELA+Q   V+ +MGK   +  E            I +   VT Q++IGTPGT+  W
Sbjct:   49 TEDDDDDEDDVVDLAANSLLNKLIRQSLIESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVERMGKFC-VDVEVMYAIRGNR---IPRGTEVTKQIIIGTPGTVLDW 230          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DD19B_HUMAN (ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.522e-27
Identity = 66/148 (44.59%), Postives = 98/148 (66.22%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMS 778
            ++P  S  +FE+L L P+LL+G+Y  M F +PSKIQ  +LP++L  P +NLIAQ+++G+GKT  FVL MLS+V+P  K PQ LC+ PT ELA+Q  +V+ +MGK +  +    AV  +      + +   ++ Q+VIGTPGT+  W S
Sbjct:   85 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK-----LERGQKISEQIVIGTPGTVLDWCS 226          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX25_RAT (ATP-dependent RNA helicase DDX25 OS=Rattus norvegicus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 7.713e-27
Identity = 79/189 (41.80%), Postives = 106/189 (56.08%), Query Frame = 2
Query:  212 NTSEDKSTAELDVEGLTIDE--SKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKW 772
            NT ED    E DV  L  +   +K + + L E+            +P  S  TFE+L L  ELLKG+Y  M F +PSKIQ ++LPM+L  P +NLIAQ+++G+GKT  FVL ML+RV+     PQ LC+ PT ELA+Q   V+ +MGK   +  E            I +   VT Q+VIGTPGT+  W
Sbjct:   48 NTEEDDD--EDDVVDLAANSLLNKLIRQSLVESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLNRVNALELFPQCLCLAPTYELALQTGRVVERMGKFC-VDVEVMYAIRGNR---IPRGTDVTKQIVIGTPGTVLDW 229          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX25_BOVIN (ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=DDX25 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.713e-27
Identity = 69/144 (47.92%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  341 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKW 772
            +P  S  TFE+L L  ELLKG+Y  M F +PSKIQ ++LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+     PQ LC+ PT ELA+Q   V+ +MGK         +     N +P  +   VT Q+VIGTPGT+  W
Sbjct:   91 SPLYSVKTFEELRLKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQCLCLAPTYELALQTGRVVERMGKF--CVDVQVMYAIRGNRIP--RGTDVTKQIVIGTPGTVLDW 229          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX25_HUMAN (ATP-dependent RNA helicase DDX25 OS=Homo sapiens GN=DDX25 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.718e-26
Identity = 73/187 (39.04%), Postives = 106/187 (56.68%), Query Frame = 2
Query:  212 NTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKW 772
            N  +++   +L    L    +K +++ L E+            +P  S  TFE+L L  ELLKG+Y  M F +PSKIQ ++LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+     PQ LC+ PT ELA+Q   V+ +MGK         +     N +P  +   +T Q++IGTPGT+  W
Sbjct:   51 NEDDEEDVVDLAANSLL---NKLIHQSLVESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVEQMGKF--CVDVQVMYAIRGNRIP--RGTDITKQIIIGTPGTVLDW 229          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_NEOFI (ATP-dependent RNA helicase dbp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.219e-25
Identity = 68/147 (46.26%), Postives = 91/147 (61.90%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL----KAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + P  S   FEDL L P +LKGL   M F+KPSKIQ  +LP++L  P +NL+ Q+++G+GKT  FVL  LSRVD +     K PQAL + PTRELA Q L V++ MG+   G+    AVPTD       S+   +   +V+GTPGT+
Sbjct:   70 NNPLYSVKNFEDLGLDPRILKGLS-NMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQILGVVQVMGQFVDGLIIGAAVPTDRD-----SRPKRLECSIVVGTPGTV 210          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_ASPFU (ATP-dependent RNA helicase dbp5 OS=Aspergillus fumigatus GN=dbp5 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.219e-25
Identity = 68/147 (46.26%), Postives = 91/147 (61.90%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL----KAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + P  S   FEDL L P +LKGL   M F+KPSKIQ  +LP++L  P +NL+ Q+++G+GKT  FVL  LSRVD +     K PQAL + PTRELA Q L V++ MG+   G+    AVPTD       S+   +   +V+GTPGT+
Sbjct:   70 NNPLYSVKNFEDLGLDPRILKGLS-SMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQILGVVQVMGQFVDGLIIGAAVPTDRD-----SRPKRLECSIVVGTPGTV 210          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_PHANO (ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria nodorum GN=DBP5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.231e-24
Identity = 74/194 (38.14%), Postives = 109/194 (56.19%), Query Frame = 2
Query:  218 SEDKSTAELDVEG---------LTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKK 769
            +E  + A+  V+G         LT  E K   K  D   D +         P  SA +FE+L LS ELLKG+   M F+KPSKIQ  +LP++L  P  N+IAQ+++G+GKT  F L +LSR+D +   PQA+ + P+RELA Q L V+  MG+   G+ +  A+P       P  +   + A V++GTPGT+++
Sbjct:   16 AEQSTVAQAQVDGSGEPANGSPLTETEYKVEVKLADMQADPN--------NPLYSAQSFEELQLSEELLKGVR-NMNFRKPSKIQEKALPLLLMNPPTNMIAQSQSGTGKTAAFSLNILSRIDLSRNEPQAIALAPSRELARQILGVITHMGQFMEGLKTMAAIPD------PTKRNQRLDAHVLVGTPGTVQE 194          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_BOTFB (ATP-dependent RNA helicase dbp5 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.608e-24
Identity = 64/143 (44.76%), Postives = 91/143 (63.64%), Query Frame = 2
Query:  341 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD-PNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +P  S  TFE L +   +LKGLY  M F+KPSKIQ  +LP++L  P  N+IAQ+++G+GKT  FV+ +LSR+D      PQALC+ P+RELA Q   V+R +G+   G+T + A+P        + +   V A VV+GTPGT+
Sbjct:   63 SPLYSVETFEQLGIDASILKGLYA-MNFKKPSKIQEKALPLLLRNPPTNMIAQSQSGTGKTAAFVITILSRLDFSKPTTPQALCLAPSRELARQIEGVIRSIGQFVDGLTVQAAIPG------AVERNAKVNAMVVVGTPGTV 198          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
DDX25_XENLA2.030e-2748.28ATP-dependent RNA helicase DDX25 OS=Xenopus laevis... [more]
DDX25_MOUSE4.522e-2741.18ATP-dependent RNA helicase DDX25 OS=Mus musculus G... [more]
DD19B_HUMAN4.522e-2744.59ATP-dependent RNA helicase DDX19B OS=Homo sapiens ... [more]
DDX25_RAT7.713e-2741.80ATP-dependent RNA helicase DDX25 OS=Rattus norvegi... [more]
DDX25_BOVIN7.713e-2747.92ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=... [more]
DDX25_HUMAN1.718e-2639.04ATP-dependent RNA helicase DDX25 OS=Homo sapiens G... [more]
DBP5_NEOFI7.219e-2546.26ATP-dependent RNA helicase dbp5 OS=Neosartorya fis... [more]
DBP5_ASPFU7.219e-2546.26ATP-dependent RNA helicase dbp5 OS=Aspergillus fum... [more]
DBP5_PHANO1.231e-2438.14ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria n... [more]
DBP5_BOTFB1.608e-2444.76ATP-dependent RNA helicase dbp5 OS=Botryotinia fuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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