CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans GN=DRS1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.844e-12
Identity = 54/184 (29.35%), Postives = 97/184 (52.72%), Query Frame = 2
Query:  218 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            S+ +   E + E + + E K+V +  D AE  +I       +P  + T+F+ L LS  +LKG+  E+KF KP+ IQ+ S+P+ L    ++++A A+ GSGKT  +++ ++ R+   P+  + + + + PTRELA+Q  E  +K+  H        +     N     ++      +VI TPG +
Sbjct:   85 SKQEEEEEEEEEEVEVPEVKEVVEPEDSAE--AIADFYEESSPQQTHTSFQTLQLSRPVLKGI-AELKFTKPTPIQSASIPIALLG--KDIVAGAQTGSGKTGAYMIPIIERLLYKPS-TSTKVIILTPTRELALQVYEFGKKLSHHVN-NLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRL 261          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12
Identity = 53/163 (32.52%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  284 NKFLDEAEDSSIKTVTTGD--TPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            ++F D+  D  ++ + T D  T Y     +F+ + L   LL+G+Y    F+KPS IQ   +         ++I QA++G+GKT  F  G+L ++D  L   QAL + PTRELA Q  +V+R +G + G+     V    T+     +       VV+GTPG +
Sbjct:    9 SQFDDKQYDKKMQEILTEDFFTSYDDVCESFDSMGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV--GGTSVREDQRILASGVHVVVGTPGRV 166          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12
Identity = 44/134 (32.84%), Postives = 72/134 (53.73%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TFE + L   LL+G+Y    ++ PS +Q+ ++  +     R+ IAQA++G+GKT  F + ML  +D  ++  QAL + PTRELA Q   V+  +G +  +  +C      TN     ++      +V GTPG +
Sbjct:   28 TFESMALKESLLRGIYA-YGYESPSAVQSRAIVQVCKG--RDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHIVSGTPGRV 156          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX54_HUMAN (ATP-dependent RNA helicase DDX54 OS=Homo sapiens GN=DDX54 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12
Identity = 44/137 (32.12%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  365 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK--APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTD--STNYVPISKRPPVTAQVVIGTPGTI 763
            F+ + LS  + KG+ ++  ++ P+ IQ  ++P+IL    ++++A AR GSGKT CF+L M  R+  +      +AL + PTRELA+Q L+  +++GK TG+ +   +  D     +  + + P     ++I TPG +
Sbjct:   98 FQSMGLSYPVFKGI-MKKGYKVPTPIQRKTIPVILDG--KDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENP----DIIIATPGRL 227          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP9_ASPNC (ATP-dependent RNA helicase dbp9 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp9 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12
Identity = 47/128 (36.72%), Postives = 69/128 (53.91%), Query Frame = 2
Query:  293 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 658
            LD  +  S +   T +T       FE LNL P L + L  E KF KP+ +QA ++P+ L    ++++A+A+ GSGKT  +VL +L  +      DP+LKA   L + PTRELA Q  +V+       G
Sbjct:    5 LDANDVPSPEVAETKETSDADEADFESLNLDPRLRQALIKE-KFTKPTPVQAKAIPLALAG--KDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQKVVTTFAAFCG 129          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP4_YEAST (ATP-dependent RNA helicase DBP4 OS=Saccharomyces cerevisiae GN=DBP4 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12
Identity = 59/169 (34.91%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  287 KFLDEAEDSSIKTVTTG----DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD----PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY--VPISKRPPVTAQVVIGTPGTI 763
            K L + ED  I+ + T     D   T A  F+DL +S   LKGL  E  F K ++IQA S+P+ L     +++A A+ GSGKT  F++ ++ ++            AL I PTRELA+Q  EVL K+G HT  ++   +      +    IS+       ++IGTPG I
Sbjct:   13 KTLRQKEDEYIENLKTKIDEYDPKITKAKFFKDLPISDPTLKGLR-ESSFIKLTEIQADSIPVSLQG--HDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR-----INILIGTPGRI 173          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP4_YEAS7 (ATP-dependent RNA helicase DBP4 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP4 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12
Identity = 59/169 (34.91%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  287 KFLDEAEDSSIKTVTTG----DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD----PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY--VPISKRPPVTAQVVIGTPGTI 763
            K L + ED  I+ + T     D   T A  F+DL +S   LKGL  E  F K ++IQA S+P+ L     +++A A+ GSGKT  F++ ++ ++            AL I PTRELA+Q  EVL K+G HT  ++   +      +    IS+       ++IGTPG I
Sbjct:   13 KTLRQKEDEYIENLKTKIDEYDPKITKAKFFKDLPISDPTLKGLR-ESSFIKLTEIQADSIPVSLQG--HDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR-----INILIGTPGRI 173          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: CSHA_GEOKA (DEAD-box ATP-dependent RNA helicase cshA OS=Geobacillus kaustophilus GN=cshA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12
Identity = 50/139 (35.97%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP----TDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TTF++L LS E++K +   M F++ + IQA ++P+ L    +++I QA+ G+GKT  F + ++ +V+    A QAL + PTRELAIQ  E L K+G    +     +P     D    +   K+ P    V++GTPG I
Sbjct:    2 TTFQELGLSQEVMKAIE-RMGFEETTPIQAKTIPLSLQN--KDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIG---AVKRVRVLPIYGGQDIERQIRALKKHP---HVIVGTPGRI 131          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RRP3_YEAST (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae GN=RRP3 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.366e-12
Identity = 55/182 (30.22%), Postives = 89/182 (48.90%), Query Frame = 2
Query:  218 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +E +  +E D E     E KKV K   ++  S+    T  D  + S   F +LNL PEL++     + + KP+ IQ+ ++P  L     ++I  A+ GSGKT  F + +L+R+  + +   A  + PTRELA Q  E    +G   G+ S C V     N +  ++       ++I TPG +
Sbjct:   37 AEKEGGSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFES---FSELNLVPELIQACK-NLNYSKPTPIQSKAIPPALEG--HDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIV--GGMNMMDQARDLMRKPHIIIATPGRL 210          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RRP3_YEAS7 (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.366e-12
Identity = 55/182 (30.22%), Postives = 89/182 (48.90%), Query Frame = 2
Query:  218 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +E +  +E D E     E KKV K   ++  S+    T  D  + S   F +LNL PEL++     + + KP+ IQ+ ++P  L     ++I  A+ GSGKT  F + +L+R+  + +   A  + PTRELA Q  E    +G   G+ S C V     N +  ++       ++I TPG +
Sbjct:   37 AEKEGGSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFES---FSELNLVPELIQACK-NLNYSKPTPIQSKAIPPALEG--HDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIV--GGMNMMDQARDLMRKPHIIIATPGRL 210          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
DRS1_CANAL1.844e-1229.35ATP-dependent RNA helicase DRS1 OS=Candida albican... [more]
IF4A_MAIZE2.409e-1232.52Eukaryotic initiation factor 4A OS=Zea mays PE=2 S... [more]
FAL1_MAGGR2.409e-1232.84ATP-dependent RNA helicase FAL1 OS=Magnaporthe gri... [more]
DDX54_HUMAN2.409e-1232.12ATP-dependent RNA helicase DDX54 OS=Homo sapiens G... [more]
DBP9_ASPNC3.146e-1236.72ATP-dependent RNA helicase dbp9 OS=Aspergillus nig... [more]
DBP4_YEAST3.146e-1234.91ATP-dependent RNA helicase DBP4 OS=Saccharomyces c... [more]
DBP4_YEAS73.146e-1234.91ATP-dependent RNA helicase DBP4 OS=Saccharomyces c... [more]
CSHA_GEOKA3.146e-1235.97DEAD-box ATP-dependent RNA helicase cshA OS=Geobac... [more]
RRP3_YEAST5.366e-1230.22ATP-dependent rRNA helicase RRP3 OS=Saccharomyces ... [more]
RRP3_YEAS75.366e-1230.22ATP-dependent rRNA helicase RRP3 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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