CB290556
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans GN=DRS1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.844e-12 Identity = 54/184 (29.35%), Postives = 97/184 (52.72%), Query Frame = 2 Query: 218 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 S+ + E + E + + E K+V + D AE +I +P + T+F+ L LS +LKG+ E+KF KP+ IQ+ S+P+ L ++++A A+ GSGKT +++ ++ R+ P+ + + + + PTRELA+Q E +K+ H + N ++ +VI TPG + Sbjct: 85 SKQEEEEEEEEEEVEVPEVKEVVEPEDSAE--AIADFYEESSPQQTHTSFQTLQLSRPVLKGI-AELKFTKPTPIQSASIPIALLG--KDIVAGAQTGSGKTGAYMIPIIERLLYKPS-TSTKVIILTPTRELALQVYEFGKKLSHHVN-NLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRL 261
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12 Identity = 53/163 (32.52%), Postives = 84/163 (51.53%), Query Frame = 2 Query: 284 NKFLDEAEDSSIKTVTTGD--TPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 ++F D+ D ++ + T D T Y +F+ + L LL+G+Y F+KPS IQ + ++I QA++G+GKT F G+L ++D L QAL + PTRELA Q +V+R +G + G+ V T+ + VV+GTPG + Sbjct: 9 SQFDDKQYDKKMQEILTEDFFTSYDDVCESFDSMGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV--GGTSVREDQRILASGVHVVVGTPGRV 166
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12 Identity = 44/134 (32.84%), Postives = 72/134 (53.73%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 TFE + L LL+G+Y ++ PS +Q+ ++ + R+ IAQA++G+GKT F + ML +D ++ QAL + PTRELA Q V+ +G + + +C TN ++ +V GTPG + Sbjct: 28 TFESMALKESLLRGIYA-YGYESPSAVQSRAIVQVCKG--RDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHIVSGTPGRV 156
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX54_HUMAN (ATP-dependent RNA helicase DDX54 OS=Homo sapiens GN=DDX54 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12 Identity = 44/137 (32.12%), Postives = 79/137 (57.66%), Query Frame = 2 Query: 365 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK--APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTD--STNYVPISKRPPVTAQVVIGTPGTI 763 F+ + LS + KG+ ++ ++ P+ IQ ++P+IL ++++A AR GSGKT CF+L M R+ + +AL + PTRELA+Q L+ +++GK TG+ + + D + + + P ++I TPG + Sbjct: 98 FQSMGLSYPVFKGI-MKKGYKVPTPIQRKTIPVILDG--KDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENP----DIIIATPGRL 227
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP9_ASPNC (ATP-dependent RNA helicase dbp9 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp9 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12 Identity = 47/128 (36.72%), Postives = 69/128 (53.91%), Query Frame = 2 Query: 293 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 658 LD + S + T +T FE LNL P L + L E KF KP+ +QA ++P+ L ++++A+A+ GSGKT +VL +L + DP+LKA L + PTRELA Q +V+ G Sbjct: 5 LDANDVPSPEVAETKETSDADEADFESLNLDPRLRQALIKE-KFTKPTPVQAKAIPLALAG--KDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQKVVTTFAAFCG 129
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP4_YEAST (ATP-dependent RNA helicase DBP4 OS=Saccharomyces cerevisiae GN=DBP4 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12 Identity = 59/169 (34.91%), Postives = 87/169 (51.48%), Query Frame = 2 Query: 287 KFLDEAEDSSIKTVTTG----DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD----PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY--VPISKRPPVTAQVVIGTPGTI 763 K L + ED I+ + T D T A F+DL +S LKGL E F K ++IQA S+P+ L +++A A+ GSGKT F++ ++ ++ AL I PTRELA+Q EVL K+G HT ++ + + IS+ ++IGTPG I Sbjct: 13 KTLRQKEDEYIENLKTKIDEYDPKITKAKFFKDLPISDPTLKGLR-ESSFIKLTEIQADSIPVSLQG--HDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR-----INILIGTPGRI 173
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP4_YEAS7 (ATP-dependent RNA helicase DBP4 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP4 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12 Identity = 59/169 (34.91%), Postives = 87/169 (51.48%), Query Frame = 2 Query: 287 KFLDEAEDSSIKTVTTG----DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD----PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY--VPISKRPPVTAQVVIGTPGTI 763 K L + ED I+ + T D T A F+DL +S LKGL E F K ++IQA S+P+ L +++A A+ GSGKT F++ ++ ++ AL I PTRELA+Q EVL K+G HT ++ + + IS+ ++IGTPG I Sbjct: 13 KTLRQKEDEYIENLKTKIDEYDPKITKAKFFKDLPISDPTLKGLR-ESSFIKLTEIQADSIPVSLQG--HDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR-----INILIGTPGRI 173
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: CSHA_GEOKA (DEAD-box ATP-dependent RNA helicase cshA OS=Geobacillus kaustophilus GN=cshA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12 Identity = 50/139 (35.97%), Postives = 79/139 (56.83%), Query Frame = 2 Query: 359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP----TDSTNYVPISKRPPVTAQVVIGTPGTI 763 TTF++L LS E++K + M F++ + IQA ++P+ L +++I QA+ G+GKT F + ++ +V+ A QAL + PTRELAIQ E L K+G + +P D + K+ P V++GTPG I Sbjct: 2 TTFQELGLSQEVMKAIE-RMGFEETTPIQAKTIPLSLQN--KDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIG---AVKRVRVLPIYGGQDIERQIRALKKHP---HVIVGTPGRI 131
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RRP3_YEAST (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae GN=RRP3 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 5.366e-12 Identity = 55/182 (30.22%), Postives = 89/182 (48.90%), Query Frame = 2 Query: 218 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 +E + +E D E E KKV K ++ S+ T D + S F +LNL PEL++ + + KP+ IQ+ ++P L ++I A+ GSGKT F + +L+R+ + + A + PTRELA Q E +G G+ S C V N + ++ ++I TPG + Sbjct: 37 AEKEGGSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFES---FSELNLVPELIQACK-NLNYSKPTPIQSKAIPPALEG--HDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIV--GGMNMMDQARDLMRKPHIIIATPGRL 210
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RRP3_YEAS7 (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRP3 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.366e-12 Identity = 55/182 (30.22%), Postives = 89/182 (48.90%), Query Frame = 2 Query: 218 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 +E + +E D E E KKV K ++ S+ T D + S F +LNL PEL++ + + KP+ IQ+ ++P L ++I A+ GSGKT F + +L+R+ + + A + PTRELA Q E +G G+ S C V N + ++ ++I TPG + Sbjct: 37 AEKEGGSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFES---FSELNLVPELIQACK-NLNYSKPTPIQSKAIPPALEG--HDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIV--GGMNMMDQARDLMRKPHIIIATPGRL 210 The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 259
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bpback to top |