CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DRS1_GIBZE (ATP-dependent RNA helicase DRS1 OS=Gibberella zeae GN=DRS1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.543e-11
Identity = 58/187 (31.02%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  206 TANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV---DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPG 757
            T +  +D S A  D E    +E+K+   F  E E++  K  T        A++F+ ++LS  +++GL   + F KP+ IQA S+P+ L    ++++  A  GSGKT  F+L +L R+      +   + + + PTRELAIQ   V  K+   T I    AV   S     +  +  +   V+I TPG
Sbjct:  214 TNHPDDDASDASDDEEDAE-EEAKRKAFFAPEEENNPDKKAT--------ASSFQTMSLSRPIMRGL-ASVGFTKPTPIQAKSIPIALMG--KDVVGGAETGSGKTGAFILPILERLLYRPKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTDIKFTLAVGGLSLKAQELELK--LRPDVIIATPG 386          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBPA_ECOLI (ATP-independent RNA helicase dbpA OS=Escherichia coli (strain K12) GN=dbpA PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.543e-11
Identity = 47/143 (32.87%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK---HTGITSEC-----AVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T F  LN+ P        E+ +   + +QA +LP IL    +++  QA+ GSGKT  F LG+L ++D +L   QAL +CPTRELA Q    LR++ +   +T I + C      +  DS  + P          +++ TPG +
Sbjct:    2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG--KDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP---------HIIVATPGRL 133          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DRS1_ASPFU (ATP-dependent RNA helicase drs1 OS=Aspergillus fumigatus GN=drs1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 58/185 (31.35%), Postives = 91/185 (49.19%), Query Frame = 2
Query:  218 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV---DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPG 757
            S+++S AE +V+    +E++K   F    E S+  +        T   +F+D NLS  +L+GL   + F  P+ IQ  ++P+ L    ++++  A  GSGKT  FV+ +L R+      +   +   + PTRELA+Q   V  K+  HT IT    V   S       + KRP     V+I TPG
Sbjct:  274 SDEESEAESEVDA---EEAEKRKAFFAPEEKSTAVS--------TFNRSFQDFNLSRPILRGL-ASVNFTTPTPIQQKTIPVALLG--KDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKKRP----DVIIATPG 440          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX54_DICDI (ATP-dependent RNA helicase ddx54 OS=Dictyostelium discoideum GN=helA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 51/188 (27.13%), Postives = 93/188 (49.47%), Query Frame = 2
Query:  212 NTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAP--QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS--TNYVPISKRPPVTAQVVIGTPGTI 763
            N   D   ++   +   I+ S+K   F  +  +   +  T+     T    F+ ++L+  LLK + ++  F  P+ IQ  S+PMIL     +++  AR GSGKT  FV+ M+ ++  +      +A+ + PTRELAIQ  +V++   + T + +   V  DS    +  +++ P     ++I TPG +
Sbjct:  183 NADADNKKSKKSNKKEEIESSEKFESFPMDENNEQEEETTSKKKKKTGG--FQSMDLTKNLLKAI-LKKGFNVPTPIQRKSIPMILDG--HDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARNP----DIIIATPGRL 361          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP9_EMENI (ATP-dependent RNA helicase dbp9 OS=Emericella nidulans GN=dbp9 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = 2
Query:  365 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 658
            FE LNL P L + L V+ KF KP+ +QA ++P+ L    ++++A+A+ GSGKT  +VL +L  +      DP++KA   L + PTRELA Q  +V+       G
Sbjct:   30 FETLNLDPRLRQAL-VKEKFSKPTPVQAKAIPLALEG--KDILARAKTGSGKTAAYVLPILQTILQKKAIDPSMKATTGLILVPTRELAEQVQKVITTFAAFCG 130          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP10_MAGGR (ATP-dependent RNA helicase DBP10 OS=Magnaporthe grisea GN=DBP10 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 46/135 (34.07%), Postives = 76/135 (56.30%), Query Frame = 2
Query:  365 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK--APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS--TNYVPISKRPPVTAQVVIGTPG 757
            F+ + L+P LL+ +     F  P+ IQ  S+P+IL    R+++  AR GSGKT  FV+ M+ R+  +      +AL + P+RELA+Q L+V+++ GK T + +   V  DS    +  ++  P     ++I TPG
Sbjct:   92 FQAMGLNPSLLQAI-TRKGFAVPTPIQRKSIPLILDR--RDVVGMARTGSGKTAAFVIPMIERLRAHSARVGARALIMSPSRELALQTLKVVKEFGKGTDLKTVLLVGGDSLEDQFGFMTTNP----DIIIATPG 219          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP10_ASPTN (ATP-dependent RNA helicase dbp10 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp10 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 53/179 (29.61%), Postives = 92/179 (51.40%), Query Frame = 2
Query:  239 ELDVEGLTIDESKKVNK-FLDEAEDSSI-KTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK--APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS--TNYVPISKRPPVTAQVVIGTPG 757
            ELD  G  +D+  + ++ F+ E + S+  K              F+ + L+  LLK +     F  P+ IQ  ++P+I+    R+++  AR GSGKT  FV+ M+ ++  +      + L + P+RELA+Q L+V++++GK T + S   V  DS    +  ++  P     +VI TPG
Sbjct:   47 ELDFLGGNVDDDDEDDEAFIAEQQTSANRKAANLKGRTVKKGGGFQAMGLNANLLKAI-TRKGFSVPTPIQRKTIPVIMDD--RDVVGMARTGSGKTAAFVIPMIEKLKSHSSKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGNP----DIVIATPG 218          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: MAK5_ASPOR (ATP-dependent RNA helicase mak5 OS=Aspergillus oryzae GN=mak5 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 58/210 (27.62%), Postives = 99/210 (47.14%), Query Frame = 2
Query:  209 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKT------VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA------------PQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA 781
            A   E K+  +   +       ++  K ++  ED  IK+      +   +      + +E L LSPE+L G+  +MKF  P+ +Q   +P IL    R++I +A  GSGKT  F + +L      L++            P AL + PTRELA Q  + + ++  H  G+ +  A+ T   + +   +R    A +VIGTPG + + +S+
Sbjct:  128 AKVKESKNAKKEKKKNAKDARKEQKEKAVESKEDKGIKSGLSFAALQEEEDDGADVSAWESLGLSPEILAGIS-KMKFTTPTSVQKACIPPILDG--RDVIGKASTGSGKTLAFGIPILEYYLEKLRSKTQKDSEKTETTPIALVLSPTRELAHQLAKHIGEVVSHAPGVNARIALLTGGLS-LQKQQRVLTNADIVIGTPGRVWEVLSS 333          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: CSHA_BACLD (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 45/136 (33.09%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG--KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TF+D  LS +L K +   M F++ + IQA ++P+ L    +++I QA+ G+GKT  F + ++ +++P     QA+ I PTRELAIQ  E L K+G  K   +               + K P     +++GTPG +
Sbjct:    4 TFQDFQLSSDLTKAIK-RMGFEEATPIQAQTIPLGLAN--KDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNP----HIIVGTPGRL 132          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
DRS1_GIBZE4.543e-1131.02ATP-dependent RNA helicase DRS1 OS=Gibberella zeae... [more]
DBPA_ECOLI4.543e-1132.87ATP-independent RNA helicase dbpA OS=Escherichia c... [more]
DRS1_ASPFU5.933e-1131.35ATP-dependent RNA helicase drs1 OS=Aspergillus fum... [more]
DDX54_DICDI5.933e-1127.13ATP-dependent RNA helicase ddx54 OS=Dictyostelium ... [more]
DBP9_EMENI5.933e-1139.42ATP-dependent RNA helicase dbp9 OS=Emericella nidu... [more]
DBP10_MAGGR5.933e-1134.07ATP-dependent RNA helicase DBP10 OS=Magnaporthe gr... [more]
DBP10_ASPTN5.933e-1129.61ATP-dependent RNA helicase dbp10 OS=Aspergillus te... [more]
MAK5_ASPOR7.749e-1127.62ATP-dependent RNA helicase mak5 OS=Aspergillus ory... [more]
CSHA_BACLD7.749e-1133.09DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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