CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_ASPOR (ATP-dependent RNA helicase dbp5 OS=Aspergillus oryzae GN=dbp5 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.608e-24
Identity = 65/147 (44.22%), Postives = 93/147 (63.27%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL----KAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + P  S  +FEDL L P +L+GL   M F+KPSKIQ  +LP++L  P +NL+ Q+++G+GKT  FVL  LSR+D +     K PQAL + PTRELA Q + V++ MG+   G+    AVP D+      S+   + + VV+GTPGT+
Sbjct:   71 NNPLYSVKSFEDLGLDPRILQGLSA-MNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRLDLSTEQAQKTPQALILAPTRELARQIVGVIQCMGQFLDGLNVSTAVPADTN-----SRHSKIESSVVVGTPGTV 211          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_MAGGR (ATP-dependent RNA helicase DBP5 OS=Magnaporthe grisea GN=DBP5 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.679e-24
Identity = 65/144 (45.14%), Postives = 97/144 (67.36%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL-KAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            D+P +S ++F +L L   ++ GL + M F+KPSKIQA +LP++L+ P RN+IAQ+++G+GKT  FV+ +LSRVD N    PQAL + P+RELA Q   V++ +G+  TG+  + A+P        IS+   V A VV+GTPGT+
Sbjct:   89 DSPLSSISSFSELGLPQGIIDGL-LAMNFKKPSKIQARALPLMLSNPPRNMIAQSQSGTGKTGAFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVIQSIGQFCTGLVVDAAIPG------AISRETGVKANVVVGTPGTV 225          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_ASPTN (ATP-dependent RNA helicase dbp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.112e-24
Identity = 67/148 (45.27%), Postives = 94/148 (63.51%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL----KAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPP-VTAQVVIGTPGTI 763
            + P  S   FEDL L P +L+GL   M F+KPSKIQ  +LP++L+ P +NL+ Q+++G+GKT  FVL +LSR+D +     K PQAL + PTRELA Q + V++ MG+    +    AVP D+ N      RP  + A VV+GTPGT+
Sbjct:   71 NNPLFSVKNFEDLGLDPRILQGLSA-MNFRKPSKIQERALPLLLSNPPKNLVGQSQSGTGKTAAFVLNILSRLDLSTEQMQKTPQALILAPTRELARQIVGVIQVMGQFLDNLIIGTAVPADTNN------RPARMEASVVVGTPGTV 211          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.982e-24
Identity = 63/144 (43.75%), Postives = 88/144 (61.11%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T   TFED  L  ELL G++ E  F+KPS IQ  ++P+ +T   R+++A+A+NG+GKT  FV+  L +V P L   QAL + PTRELA+Q  +V+R +GKH GI+  C V T  TN      R   T  +++GTPG +
Sbjct:   37 TDDVLNTKGNTFEDFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAITG--RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGGTNLRDDILRLNETVHILVGTPGRV 175          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.982e-24
Identity = 63/144 (43.75%), Postives = 88/144 (61.11%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T   TFED  L  ELL G++ E  F+KPS IQ  ++P+ +T   R+++A+A+NG+GKT  FV+  L +V P L   QAL + PTRELA+Q  +V+R +GKH GI+  C V T  TN      R   T  +++GTPG +
Sbjct:   37 TDDVLNTKGNTFEDFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAITG--RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGGTNLRDDILRLNETVHILVGTPGRV 175          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_EMENI (ATP-dependent RNA helicase dbp5 OS=Emericella nidulans GN=dbp5 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.042e-23
Identity = 68/147 (46.26%), Postives = 93/147 (63.27%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN----LKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + P  S   FEDL L P +L+GL   M F+KPSKIQ  +LP+++  P +NL+ Q+++G+GKT  FVL +LSR+D +     K PQAL + PTRELA Q + V++ MGK   G+    AVP D TN  P      + A VV+GTPGT+
Sbjct:   62 NNPLYSVKNFEDLGLDPRILQGLSA-MNFRKPSKIQERALPLLMGNPPKNLVGQSQSGTGKTAAFVLNILSRLDLSSEQAQKTPQALILAPTRELARQIVGVIQVMGKFLDGLHIGTAVPAD-TNARPTR----MEASVVVGTPGTV 202          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX19_DROME (DEAD-box helicase Dbp80 OS=Drosophila melanogaster GN=Dbp80 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.362e-23
Identity = 77/208 (37.02%), Postives = 108/208 (51.92%), Query Frame = 2
Query:  209 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSS----IKTVTTG---------------DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKW 772
            A  SED+  ++L V+ L +D         D A+ +     IK +  G               ++P  S  TFE L+L   LLKG+Y  M F  PSKIQ  +LP +L  P +N+IAQ+++G+GKT  FVL MLSRV+  L  PQ LC+ PT ELAIQ  EV  +MG+    I    AV  +      + +   +   ++IGTPG +  W
Sbjct:    5 AKKSEDQEVSKL-VDKLNLDSKSGEETDFDVADPAETSLLIKILGKGLVNTKLSLDLQQKNPNSPLHSVKTFEALHLKASLLKGIYA-MGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFAVRGEE-----VDRSKKIEEHILIGTPGKLLDW 205          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_SCLS1 (ATP-dependent RNA helicase dbp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.362e-23
Identity = 62/143 (43.36%), Postives = 91/143 (63.64%), Query Frame = 2
Query:  341 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD-PNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +P  S  TFE L +   +LKGLY  M F+KPSKIQ  +LP++L  P  N+IAQ+++G+GKT  FV+ +LSR+D      PQALC+ P+RELA Q   V+R +G+   G++ + A+P        + +   V A V++GTPGT+
Sbjct:   63 SPLYSVDTFEQLGIDASILKGLYA-MNFKKPSKIQEKALPLLLGNPPTNMIAQSQSGTGKTAAFVITILSRLDFSKPTTPQALCLAPSRELARQIEGVVRSIGQFVEGLSVQAAIPG------AVERNARVNAMVIVGTPGTV 198          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_ASPCL (ATP-dependent RNA helicase dbp5 OS=Aspergillus clavatus GN=dbp5 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.033e-23
Identity = 67/148 (45.27%), Postives = 90/148 (60.81%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL----KAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPP-VTAQVVIGTPGTI 763
            + P  S   FEDL L P +LKGL   M F+KPSKIQ  +LP++L  P +NL+ Q+++G+GKT  FVL  LSRVD +     K PQAL + PTRELA Q + V+  MG+   G+    AVP D      I+ RP  +   + +GTPGT+
Sbjct:   70 NNPLYSVKNFEDLGLDPRILKGLSA-MNFRKPSKIQERALPLLLGNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQIVGVVSVMGQFLDGLIIGTAVPAD------INNRPKRLECSIAVGTPGTV 210          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_ASPNC (ATP-dependent RNA helicase dbp5 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.961e-23
Identity = 64/147 (43.54%), Postives = 92/147 (62.59%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN----LKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + P  S   FEDL L P +L+GL   M F+KPSKIQ  +LP++L  P +NL+ Q+++G+GKT  FVL +LSR+D +     K PQAL + PTRELA Q + V++ MG+   G+    AVP D+      ++   +   VV+GTPGT+
Sbjct:   67 NNPLFSVKNFEDLGLDPRILQGLSA-MNFRKPSKIQERALPLLLGNPAKNLVGQSQSGTGKTAAFVLNILSRLDLSSEQLQKTPQALILAPTRELARQIVGVIQVMGQFLDGLVIGTAVPADTG-----ARPAKMECSVVVGTPGTV 207          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
DBP5_ASPOR1.608e-2444.22ATP-dependent RNA helicase dbp5 OS=Aspergillus ory... [more]
DBP5_MAGGR4.679e-2445.14ATP-dependent RNA helicase DBP5 OS=Magnaporthe gri... [more]
DBP5_ASPTN6.112e-2445.27ATP-dependent RNA helicase dbp5 OS=Aspergillus ter... [more]
DHH1_YEAST7.982e-2443.75ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YEAS77.982e-2443.75ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DBP5_EMENI1.042e-2346.26ATP-dependent RNA helicase dbp5 OS=Emericella nidu... [more]
DDX19_DROME1.362e-2337.02DEAD-box helicase Dbp80 OS=Drosophila melanogaster... [more]
DBP5_SCLS11.362e-2343.36ATP-dependent RNA helicase dbp5 OS=Sclerotinia scl... [more]
DBP5_ASPCL3.033e-2345.27ATP-dependent RNA helicase dbp5 OS=Aspergillus cla... [more]
DBP5_ASPNC3.961e-2343.54ATP-dependent RNA helicase dbp5 OS=Aspergillus nig... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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