CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.174e-23
Identity = 62/144 (43.06%), Postives = 87/144 (60.42%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T   +FED NL  ELL G++ E  F+KPS IQ  S+PM L    R+++A+A+NG+GKT  F++  L ++ P L   QAL + PTRELA+Q  +V+R +GKH GI  +C V T  T+      R      V++GTPG +
Sbjct:   21 TEDVLNTKGKSFEDFNLKRELLMGIF-EAGFEKPSPIQEESIPMALAG--RDVLARAKNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHLGI--QCMVTTGGTSLKDDILRLNDPVHVLVGTPGRV 159          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.174e-23
Identity = 60/144 (41.67%), Postives = 88/144 (61.11%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T   +FED  L  ELL G++ E  F+KPS IQ  ++P+ +T   R+++A+A+NG+GKT  FV+  L ++ P L   QAL + PTRELA+Q  +V+R +G+H G++  C V T  TN      R   T  V++GTPG +
Sbjct:   22 TDDVLNTKGNSFEDFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAITG--RDILARAKNGTGKTAAFVIPTLEKIKPKLNKIQALIMVPTRELALQTSQVIRTLGRHCGVS--CMVTTGGTNLRDDILRLNETVHVLVGTPGRV 160          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_GIBZE (ATP-dependent RNA helicase DBP5 OS=Gibberella zeae GN=DBP5 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.174e-23
Identity = 63/144 (43.75%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  341 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD-PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTI 763
            TP+ SATT++DL L  +LLKGL + + F KPSK+Q  SLP++L+ P RN++AQ+++G+GKT  FV  +LSRVD      PQAL + P+RELA Q   V+  +G+        A        +P  + +  PV A V++GTPGT+
Sbjct:   69 TPFHSATTWQDLGLREDLLKGL-LSLNFLKPSKVQGKSLPLMLSDPPRNMLAQSQSGTGKTAAFVTAILSRVDFSKPDQPQALALAPSRELARQIEGVINAIGRFVENKKVAAA-------IPGVLPRGEPVRASVIVGTPGTV 204          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.505e-22
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T   +FED NL  ELL G++ E  F+KPS IQ  S+PM L    R+++A+A+NG+GKT  F++  L  V P L   QAL + PTRELA+Q  +V+R +GKH G  ++C V T  T+      R      +++GTPG +
Sbjct:   21 TEDVLNTKGKSFEDFNLKRELLMGIF-EAGFEKPSPIQEESIPMALAG--RDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHVG--TQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRV 159          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_AJECN (ATP-dependent RNA helicase DBP5 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP5 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.505e-22
Identity = 63/146 (43.15%), Postives = 95/146 (65.07%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK-APQALCICPTRELAIQNLEVLRKMGKHTG-ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + P  S  +FE+L L P +L+GL+  M F++PSKIQ  +LP++L  P  N+I Q+++G+GKT  FVL +LSR+D  P ++ APQAL + P+RELA Q + V++ MG +   +    AVP +S      ++   V A VV+GTPGT+
Sbjct:   82 NNPLYSIKSFEELGLHPSILQGLH-SMSFRRPSKIQEKALPLLLNNPPANMIGQSQSGTGKTAAFVLNILSRLDLSPQMELAPQALVLAPSRELARQIVGVIQVMGSYVDKLKVATAVPMES------NRNQKVEAPVVVGTPGTV 220          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_CHAGB (ATP-dependent RNA helicase DBP5 OS=Chaetomium globosum GN=DBP5 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.568e-22
Identity = 75/195 (38.46%), Postives = 110/195 (56.41%), Query Frame = 2
Query:  206 TANTSEDKSTAELDVEGL-------TIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD-PNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TA T E   T E   +G+       T D   K++    +A+D S+         Y+   +FE+L L+  +  GL + M F+KPSKIQ  +LP++L+ P RN+IAQ+++G+GKT  FVL +LSRVD      PQAL + P+RELA Q   V++ +G+    +  E A+P        IS+   V A VV+GTPGT+
Sbjct:   24 TATTGEGNGTEEPVDDGVNKGLVETTYDVEVKLSGL--QADDESLL--------YSGVASFEELGLAKSINDGL-LAMNFKKPSKIQEKALPLMLSNPPRNMIAQSQSGTGKTAAFVLTVLSRVDLTKPTQPQALLLAPSRELARQIQSVIQTIGQFCENLNVEAAIPGS------ISRETGVRANVVVGTPGTV 201          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.720e-22
Identity = 62/144 (43.06%), Postives = 85/144 (59.03%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T   TFED  L  ELL G++ E  F+KPS IQ  S+P+ L    R+++A+A+NG+GKT  FV+  L +V       QAL + PTRELA+Q  +V+R +GKH GI+  C V T  TN      R   T  +++GTPG +
Sbjct:   25 TEDVLSTKGNTFEDFYLKRELLMGIF-EAGFEKPSPIQEESIPVALAG--RDILARAKNGTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGGTNLRDDILRLNETVHILVGTPGRV 163          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.757e-22
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T   +FED  L  ELL G++ E  F+KPS IQ  ++P+ +    ++++A+A+NG+GKT  FV+  L +V P L   QAL + PTRELA+Q  +V+R +GKH GI+  C V T  TN      R      +++GTPG +
Sbjct:   27 TDDVLNTKGRSFEDFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAIAG--KDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGGTNLRDDIMRLNEPVHILVGTPGRV 165          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.274e-21
Identity = 61/144 (42.36%), Postives = 85/144 (59.03%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T   TFED  L  ELL G++ E  F++PS IQ  ++P+ L    R+++A+A+NG+GKT  FV+  L  V P +   QAL + PTRELA+Q  +V+R +GKH GI+  C V T  TN      R      V++GTPG +
Sbjct:   20 TDDVLNTKGNTFEDFYLRRELLMGIF-EAGFERPSPIQEEAIPIALAR--RDILARAKNGTGKTAAFVIPTLEIVKPKVNKIQALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGGTNLRDDIMRLNEPVHVLVGTPGRV 158          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.664e-21
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T   TFED  L  ELL G++ E  F+KPS +Q  S+PM L    R+++A+A+NG+GKT  FV+  L +  P +   QAL + PTRELA+Q  +V+R +GKH G+  +C V T  T+      R      V++GTPG +
Sbjct:   21 TEDVLNTKGKTFEDFPLKRELLMGIF-EAGFEKPSPVQEESIPMALAG--RDILARAKNGTGKTASFVIPCLQQARPKVNKIQALILVPTRELALQTSQVVRTLGKHLGL--QCMVTTGGTSLRDDILRLNDPVHVLVGTPGRV 159          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
DHH1_PICST5.174e-2343.06ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]
DHH1_CANGA5.174e-2341.67ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
DBP5_GIBZE5.174e-2343.75ATP-dependent RNA helicase DBP5 OS=Gibberella zeae... [more]
DHH1_CANAL1.505e-2242.36ATP-dependent RNA helicase DHH1 OS=Candida albican... [more]
DBP5_AJECN1.505e-2243.15ATP-dependent RNA helicase DBP5 OS=Ajellomyces cap... [more]
DBP5_CHAGB2.568e-2238.46ATP-dependent RNA helicase DBP5 OS=Chaetomium glob... [more]
DHH1_VANPO5.720e-2243.06ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
DHH1_KLULA9.757e-2240.97ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
DHH1_ASHGO1.274e-2142.36ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii... [more]
DHH1_DEBHA1.664e-2141.67ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
back to top