CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.324e-21
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T  T FED  L  ELL G++ E  F+ PS IQ  ++P+ L    R+++A+A+NG+GKT  FV+  L +V+P +   QAL + PTRELA+Q  +V + +GKH GI  +  V T  TN      R   T  V++GTPG +
Sbjct:   19 TEDVTATKGTGFEDFFLKRELLMGIF-EAGFENPSPIQEEAIPIALAG--RDILARAKNGTGKTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKHLGI--KVMVTTGGTNLRDDIMRLEDTVHVLVGTPGRV 157          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_COCIM (ATP-dependent RNA helicase DHH1 OS=Coccidioides immitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.324e-21
Identity = 58/144 (40.28%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R +P +   QAL + PTRELA+Q  +V + +GKH GI     V T  T       R   T  +++GTPG I
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERTNPKISKTQALILVPTRELALQTSQVCKTLGKHLGI--NVMVTTGGTGLQDDIIRLSDTVHIIVGTPGRI 176          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.409e-20
Identity = 58/144 (40.28%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L RV+P +   QAL + PTRELA+Q  +V + +GKH GI     V T  T       R      +++GTPG I
Sbjct:   40 TEDVTATKGLEFEDFFIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQTSQVCKTLGKHLGI--NVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRI 178          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_NEUCR (ATP-dependent RNA helicase dbp-5 OS=Neurospora crassa GN=dbp-5 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.403e-20
Identity = 69/191 (36.13%), Postives = 113/191 (59.16%), Query Frame = 2
Query:  206 TANTSEDKSTAELDVEGLTIDESKK---VNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD-PNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +A  SE+    E +    +I+ES+     N++  E + S ++  T  ++P  S ++F++L L   + +GL + + F+KPSK+Q   LP++L+ P RN+IAQ+++G+GKT  FVL +LSR+D      PQAL + P+RELA Q   V++ +G+    +  E A+P        IS+   V   VV+GTPGT+
Sbjct:   25 SAPASEEPKAPENET---SIEESQSNLVKNEYEVEIKLSDLQNDT--ESPLYSVSSFDELGLPEAVNRGL-LAINFKKPSKVQEKCLPLMLSDPPRNMIAQSQSGTGKTAAFVLTVLSRIDLSKPHQPQALLLAPSRELARQIQTVVQTIGQFCENLIVEAAIPG------AISRETGVRGSVVVGTPGTV 203          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_COCIM (ATP-dependent RNA helicase DBP5 OS=Coccidioides immitis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.403e-20
Identity = 69/201 (34.33%), Postives = 114/201 (56.72%), Query Frame = 2
Query:  212 NTSEDKSTAELD---------VEGLTIDESKKVNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD---PNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIK 766
            +T  +K  AE D         V+G +  E ++ ++  D   D ++K        + P  S  +FE+L L+  +  GL  +M F++PSKIQ  +LP+++  P  N+IAQ+++G+GKT  FVL +LSR++      K+PQAL + P+RELA Q + V++ MG    G+    AVP +      +++   V A +V+GTPGT++
Sbjct:   33 STEAEKPAAEDDSGKGPSIPQVDGAS--EDQRGSELQDSEFDVNVKLSDLQADPNNPLYSIKSFEELGLAEPIQMGLS-KMNFRRPSKIQERALPLLMANPPTNMIAQSQSGTGKTAAFVLNILSRLELTPEKQKSPQALVLAPSRELARQIVGVIQAMGTFVEGLFVATAVPME------MNRNQRVEASIVVGTPGTVQ 224          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_NEOFI (ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.354e-20
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     QAL + PTRELA+Q  +V + +GKH GI     V T  T  +    R      +++GTPG +
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGI--NVMVTTGGTGLMDDIIRLNDAVHILVGTPGRV 176          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_ASPFU (ATP-dependent RNA helicase dhh1 OS=Aspergillus fumigatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.354e-20
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     QAL + PTRELA+Q  +V + +GKH GI     V T  T  +    R      +++GTPG +
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGI--NVMVTTGGTGLMDDIIRLNDAVHILVGTPGRV 176          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_ASPCL (ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.354e-20
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     QAL + PTRELA+Q  +V + +GKH GI     V T  T  +    R      +++GTPG +
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGI--NVMVTTGGTGLMDDIIRLNDAVHILVGTPGRV 176          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.993e-20
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED ++  ELL G++ EM ++KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     Q L + PTRELA+Q  +V + +G+H GI     V T  T       R      +++GTPG I
Sbjct:   38 TEDVTATKGLEFEDFSIKRELLMGIF-EMGYEKPSPIQEEAIPVALTG--RDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHLGI--NVMVTTGGTTLRDDILRLQEPVHIIVGTPGRI 176          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_ASPTN (ATP-dependent RNA helicase dhh1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.133e-20
Identity = 56/144 (38.89%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     QAL + PTRELA+Q   V + +GKH GI     V T  T  +    R      +++GTPG +
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGI--NVMVTTGGTGLMDDIIRLNDAVHILVGTPGRV 176          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
DHH1_YARLI6.324e-2141.67ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]
DHH1_COCIM6.324e-2140.28ATP-dependent RNA helicase DHH1 OS=Coccidioides im... [more]
DHH1_PHANO1.409e-2040.28ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria n... [more]
DBP5_NEUCR2.403e-2036.13ATP-dependent RNA helicase dbp-5 OS=Neurospora cra... [more]
DBP5_COCIM2.403e-2034.33ATP-dependent RNA helicase DBP5 OS=Coccidioides im... [more]
DHH1_NEOFI5.354e-2038.89ATP-dependent RNA helicase dhh1 OS=Neosartorya fis... [more]
DHH1_ASPFU5.354e-2038.89ATP-dependent RNA helicase dhh1 OS=Aspergillus fum... [more]
DHH1_ASPCL5.354e-2038.89ATP-dependent RNA helicase dhh1 OS=Aspergillus cla... [more]
DHH1_BOTFB6.993e-2038.89ATP-dependent RNA helicase dhh1 OS=Botryotinia fuc... [more]
DHH1_ASPTN9.133e-2038.89ATP-dependent RNA helicase dhh1 OS=Aspergillus ter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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