CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290556_ssr151 microsatellite CB290556_ssr151:151..165. BLAST: Citrus ESTs to Prunus persica proteins V1
CB290556_ssr186 microsatellite CB290556_ssr186:186..203. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5898 contig Csv1_Contig5898:68..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_ASPOR (ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae GN=dhh1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.133e-20
Identity = 56/144 (38.89%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     QAL + PTRELA+Q   V + +GKH GI     V T  T  +    R      +++GTPG +
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGI--NVMVTTGGTGLMDDIIRLNDAVHILVGTPGRV 176          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.133e-20
Identity = 56/144 (38.89%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     QAL + PTRELA+Q   V + +GKH GI     V T  T  +    R      +++GTPG +
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGI--NVMVTTGGTGLMDDIIRLNDAVHILVGTPGRV 176          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_GIBZE (ATP-dependent RNA helicase DHH1 OS=Gibberella zeae GN=DHH1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.193e-19
Identity = 58/144 (40.28%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FE+  L  +LL G++ E  F+KPS IQ  S+P+ LT   R+++A+A+NG+GKT  FV+  L R++P +   Q L + PTRELA+Q  +V + +GKH GI     V T  T       R      +V+GTPG I
Sbjct:   33 TEDVTNTKGLEFENFALKRDLLMGIF-EAGFEKPSPIQEESIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKISKIQCLILVPTRELAMQTSQVCKTLGKHLGI--NVMVTTGGTGLRDDIIRLQDPVHIVVGTPGRI 171          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.470e-19
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  L  +LLKG+Y E  F+KPS IQ  S+P+ LT    +++A+A+NG+GKT  F + +L ++DPN    QA+ + PTRELA+Q  +V +++ K+  I  +  V T  T+      R      +++GTPG I
Sbjct:  115 TADVTATKGNEFEDYFLKRDLLKGIY-EKGFEKPSPIQEESIPIALTGS--DILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNI--QVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRI 253          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_CHAGB (ATP-dependent RNA helicase DHH1 OS=Chaetomium globosum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.470e-19
Identity = 56/142 (39.44%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            D   T    FED  L  +LL G++ E  F+KPS IQ  S+P+ L    R+++A+A+NG+GKT  FV+  L +++P +   Q L + PTRELA+Q  +V + +GKH GI     V T  T       R      +V+GTPG I
Sbjct:    4 DVTNTKGLDFEDFGLKRDLLMGIF-EAGFEKPSPIQEESIPVALVG--RDILARAKNGTGKTAAFVIPALEKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGI--NVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRI 140          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_SCHPO (Putative ATP-dependent RNA helicase ste13 OS=Schizosaccharomyces pombe GN=ste13 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.532e-19
Identity = 57/144 (39.58%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T  T FED  L  ELL G++ E  F++PS IQ  S+P+ L+   R+++A+A+NG+GKT  FV+  L +VD      Q L + PTRELA+Q  +V + +GKH  +  +  V T  T       R   T  +V+GTPG +
Sbjct:   35 TEDVTKTRGTEFEDYYLKRELLMGIF-EAGFERPSPIQEESIPIALSG--RDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNV--KVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRV 173          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.532e-19
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T   +FE+  L  ELL G++ E  F+KPS IQ  S+PM L    R+++A+A+NG+GKT  F++  L +V   L   Q L + PTRELA+Q  +V++ +GKH  +  +C V T  T       R      +++GTPG +
Sbjct:   20 TEDVTKTQGKSFEEFGLKRELLMGIF-EAGFEKPSPIQEESIPMALAG--RDILARAKNGTGKTASFIIPALQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKH--LKLQCMVTTGGTLLRDDVMRLDEPVHILVGTPGRV 158          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_MAGGR (ATP-dependent RNA helicase DHH1 OS=Magnaporthe grisea GN=DHH1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.532e-19
Identity = 57/144 (39.58%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FE+  L  +LL G++ E  F+KPS IQ  S+P+ LT   R+++A+A+NG+GKT  FV+  L  ++P +   Q L + PTRELA+Q  +V + +GKH GI     V T  T       R      +V+GTPG I
Sbjct:   27 TEDVTNTKGLEFENFGLKRDLLMGIF-EAGFEKPSPIQEESIPVALTG--RDILARAKNGTGKTAAFVVPALETINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGI--NVMVTTGGTTLRDDILRLQDPVHIVVGTPGRI 165          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.920e-19
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  L  ELL G+Y E  F++PS IQ  S+P+ LT   R+++A+A+NG+GKT  F + +L ++D +    QA+ I PTRELA+Q  +V +++GKH  I  +  V T  T+      R      +++GTPG I
Sbjct:  122 TEDVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALTG--RDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI 260          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  L  ELL G+Y E  F++PS IQ  S+P+ LT    +++A+A+NG+GKT  F +  L ++DP   A Q + + PTRELA+Q  +V +++GK+  I  +  V T  T+      R      +++GTPG I
Sbjct:  138 TEDVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNI--QVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRI 276          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
DHH1_ASPOR9.133e-2038.89ATP-dependent RNA helicase dhh1 OS=Aspergillus ory... [more]
DHH1_ASPNC9.133e-2038.89ATP-dependent RNA helicase dhh1 OS=Aspergillus nig... [more]
DHH1_GIBZE1.193e-1940.28ATP-dependent RNA helicase DHH1 OS=Gibberella zeae... [more]
RH12_ARATH3.470e-1938.89DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]
DHH1_CHAGB3.470e-1939.44ATP-dependent RNA helicase DHH1 OS=Chaetomium glob... [more]
DHH1_SCHPO4.532e-1939.58Putative ATP-dependent RNA helicase ste13 OS=Schiz... [more]
DHH1_PICGU4.532e-1938.19ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]
DHH1_MAGGR4.532e-1939.58ATP-dependent RNA helicase DHH1 OS=Magnaporthe gri... [more]
RH8_ARATH5.920e-1939.58DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
RH12_ORYSJ2.938e-1838.19DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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