CB290556
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18 Identity = 54/144 (37.50%), Postives = 82/144 (56.94%), Query Frame = 2 Query: 332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 T D T + FED L ELL G+Y F++PS IQ ++PM LT R+++A+A+NG+GKT F++ L+R++ +L QAL + PTRELA+Q +V + +G H + + T T R +++GTPG I Sbjct: 27 TEDVTATQGSRFEDFGLRRELLMGIYTA-GFERPSPIQEQAIPMALTG--RDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIP-NLQVMITTGGTTLRDDILRLQQPVHILVGTPGRI 166
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18 Identity = 54/144 (37.50%), Postives = 82/144 (56.94%), Query Frame = 2 Query: 332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 T D T + FED L ELL G+Y F++PS IQ ++PM LT R+++A+A+NG+GKT F++ L+R++ +L QAL + PTRELA+Q +V + +G H + + T T R +++GTPG I Sbjct: 27 TEDVTATQGSRFEDFGLRRELLMGIYTA-GFERPSPIQEQAIPMALTG--RDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIP-NLQVMITTGGTTLRDDILRLQQPVHILVGTPGRI 166
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_NEUCR (ATP-dependent RNA helicase dhh-1 OS=Neurospora crassa GN=dhh-1 PE=3 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 5.011e-18 Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 2 Query: 332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 T D T +ED +LL G++ E F+KPS IQ ++P+ LT R+++A+A+NG+GKT FV+ L++++P + Q L + PTRELA+Q +V + +GKH GI V T T R +V+GTPG I Sbjct: 36 TEDVTNTRGLDWEDFIHDRDLLMGIF-EAGFEKPSPIQEEAIPVALTG--RDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGI--NVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRI 174
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.545e-18 Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 TFE +NL P+LLKG+Y F+ PS IQ+ ++ I+ R+ IAQA++G+GKT F +GML +D N K QAL + PTRELA+Q V++ +G + I + + T+ K+ Q+V GTPG + Sbjct: 27 TFESMNLKPDLLKGIY-GYGFEAPSAIQSRAIMQIING--RDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYMNIHTHACI--GGTHVGDDIKKLKQGQQIVSGTPGRV 155
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 8.548e-18 Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 2 Query: 332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 T D T FED L ELL G+Y E F++PS IQ S+P+ LT +++A+A+NG+GKT F + L ++D + A Q + + PTRELA+Q +V +++GKH I + V T T+ R +++GTPG I Sbjct: 115 TEDVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRI 253
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_CAVPO (Probable ATP-dependent RNA helicase DDX6 (Fragment) OS=Cavia porcellus GN=DDX6 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 8.548e-18 Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = 2 Query: 326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 + T D T FED L ELL G++ EM ++KPS IQ S+P+ LT R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G ++ T TN R T VVI TPG I Sbjct: 74 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALTG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRI 215
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.116e-17 Identity = 55/153 (35.95%), Postives = 88/153 (57.52%), Query Frame = 2 Query: 305 EDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 +DS +K T+ ++ TFE +NL P+LL+G+Y F+ PS IQ+ ++ I++ +++IAQA++G+GKT F +G+L +D K QAL + PTRELA Q+ V+ +G + +T+ T K+ QVV GTPG + Sbjct: 7 DDSKLKFKTSKKLKVSA--TFESMNLKPDLLRGIYF-YGFEYPSSIQSRAISQIISG--KDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHAC--TGGKALQQDIKKVSKNCQVVSGTPGRV 152
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.116e-17 Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 2 Query: 320 KTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 K V T A TFE LNL +LL+G+Y F+KPS IQ ++ I+ R++IAQA++G+GKT F + ML +D NL+ QAL + PTRELA+Q V+ +G + ++ C T+ ++ QVV GTPG + Sbjct: 10 KLVFESSEAVTVAPTFEALNLKEDLLRGIYA-YNFEKPSAIQQRAIIPIIRG--RDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNVS--CHACIGGTSVGEDIRKLEAGQQVVSGTPGRV 152
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.458e-17 Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = 2 Query: 332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 T D T FED L ELL G+Y E F++PS IQ S+P+ LT +++A+A+NG+GKT F + L ++D A Q + + PTRELA+Q +V +++GKH I + V T T+ R +++GTPG I Sbjct: 125 TEDVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRI 263
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.458e-17 Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 2 Query: 332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 T D T FED L +LL+G+Y E F+KPS IQ S+P+ LT +++A+A+NG+GKT F + L ++DP QA+ + PTRELA+Q +V +++ K+ I E V T T+ R +++GTPG I Sbjct: 145 TEDVTATKGNEFEDYFLKRDLLRGIY-EKGFEKPSPIQEESIPIALTGS--DILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKI--EVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRI 283 The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 259
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bpback to top |