CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18
Identity = 54/144 (37.50%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T  + FED  L  ELL G+Y    F++PS IQ  ++PM LT   R+++A+A+NG+GKT  F++  L+R++ +L   QAL + PTRELA+Q  +V + +G H     +  + T  T       R      +++GTPG I
Sbjct:   27 TEDVTATQGSRFEDFGLRRELLMGIYTA-GFERPSPIQEQAIPMALTG--RDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIP-NLQVMITTGGTTLRDDILRLQQPVHILVGTPGRI 166          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18
Identity = 54/144 (37.50%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T  + FED  L  ELL G+Y    F++PS IQ  ++PM LT   R+++A+A+NG+GKT  F++  L+R++ +L   QAL + PTRELA+Q  +V + +G H     +  + T  T       R      +++GTPG I
Sbjct:   27 TEDVTATQGSRFEDFGLRRELLMGIYTA-GFERPSPIQEQAIPMALTG--RDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIP-NLQVMITTGGTTLRDDILRLQQPVHILVGTPGRI 166          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DHH1_NEUCR (ATP-dependent RNA helicase dhh-1 OS=Neurospora crassa GN=dhh-1 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.011e-18
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    +ED     +LL G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L++++P +   Q L + PTRELA+Q  +V + +GKH GI     V T  T       R      +V+GTPG I
Sbjct:   36 TEDVTNTRGLDWEDFIHDRDLLMGIF-EAGFEKPSPIQEEAIPVALTG--RDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGI--NVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRI 174          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.545e-18
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TFE +NL P+LLKG+Y    F+ PS IQ+ ++  I+    R+ IAQA++G+GKT  F +GML  +D N K  QAL + PTRELA+Q   V++ +G +  I +   +    T+     K+     Q+V GTPG +
Sbjct:   27 TFESMNLKPDLLKGIY-GYGFEAPSAIQSRAIMQIING--RDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYMNIHTHACI--GGTHVGDDIKKLKQGQQIVSGTPGRV 155          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.548e-18
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  L  ELL G+Y E  F++PS IQ  S+P+ LT    +++A+A+NG+GKT  F +  L ++D +  A Q + + PTRELA+Q  +V +++GKH  I  +  V T  T+      R      +++GTPG I
Sbjct:  115 TEDVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRI 253          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_CAVPO (Probable ATP-dependent RNA helicase DDX6 (Fragment) OS=Cavia porcellus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.548e-18
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + T D   T    FED  L  ELL G++ EM ++KPS IQ  S+P+ LT   R+++A+A+NG+GK+  +++ +L R+D      QA+ I PTRELA+Q  ++  ++ KH G  ++    T  TN      R   T  VVI TPG I
Sbjct:   74 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALTG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRI 215          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.116e-17
Identity = 55/153 (35.95%), Postives = 88/153 (57.52%), Query Frame = 2
Query:  305 EDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +DS +K  T+     ++  TFE +NL P+LL+G+Y    F+ PS IQ+ ++  I++   +++IAQA++G+GKT  F +G+L  +D   K  QAL + PTRELA Q+  V+  +G +  +T+     T         K+     QVV GTPG +
Sbjct:    7 DDSKLKFKTSKKLKVSA--TFESMNLKPDLLRGIYF-YGFEYPSSIQSRAISQIISG--KDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHAC--TGGKALQQDIKKVSKNCQVVSGTPGRV 152          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.116e-17
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 2
Query:  320 KTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            K V       T A TFE LNL  +LL+G+Y    F+KPS IQ  ++  I+    R++IAQA++G+GKT  F + ML  +D NL+  QAL + PTRELA+Q   V+  +G +  ++  C      T+     ++     QVV GTPG +
Sbjct:   10 KLVFESSEAVTVAPTFEALNLKEDLLRGIYA-YNFEKPSAIQQRAIIPIIRG--RDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNVS--CHACIGGTSVGEDIRKLEAGQQVVSGTPGRV 152          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.458e-17
Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  L  ELL G+Y E  F++PS IQ  S+P+ LT    +++A+A+NG+GKT  F +  L ++D    A Q + + PTRELA+Q  +V +++GKH  I  +  V T  T+      R      +++GTPG I
Sbjct:  125 TEDVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRI 263          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.458e-17
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  332 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T D   T    FED  L  +LL+G+Y E  F+KPS IQ  S+P+ LT    +++A+A+NG+GKT  F +  L ++DP     QA+ + PTRELA+Q  +V +++ K+  I  E  V T  T+      R      +++GTPG I
Sbjct:  145 TEDVTATKGNEFEDYFLKRDLLRGIY-EKGFEKPSPIQEESIPIALTGS--DILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKI--EVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRI 283          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
DHH1_CRYNV3.837e-1837.50ATP-dependent RNA helicase VAD1 OS=Cryptococcus ne... [more]
DHH1_CRYNE3.837e-1837.50ATP-dependent RNA helicase DHH1 OS=Cryptococcus ne... [more]
DHH1_NEUCR5.011e-1838.19ATP-dependent RNA helicase dhh-1 OS=Neurospora cra... [more]
FAL1_PICST6.545e-1840.30ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
RH6_ORYSJ8.548e-1838.19DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]
DDX6_CAVPO8.548e-1839.04Probable ATP-dependent RNA helicase DDX6 (Fragment... [more]
FAL1_KLULA1.116e-1735.95ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]
FAL1_CRYNE1.116e-1738.51ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne... [more]
RH8_ORYSJ1.458e-1738.19DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat... [more]
RH6_ARATH1.458e-1738.19DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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