CB290556
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_XENTR (Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis GN=ddx6 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.458e-17 Identity = 57/146 (39.04%), Postives = 83/146 (56.85%), Query Frame = 2 Query: 326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 + T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G A T TN R T VVI TPG I Sbjct: 84 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGVKVMAT-TGGTNLRDDIMRLDDTVHVVIATPGRI 225
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_XENLA (ATP-dependent RNA helicase ddx6 OS=Xenopus laevis GN=ddx6 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.458e-17 Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 2 Query: 326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 + T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G ++ T TN R T VVI TPG I Sbjct: 84 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRI 225
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.904e-17 Identity = 58/158 (36.71%), Postives = 91/158 (57.59%), Query Frame = 2 Query: 302 AEDSSIKTVTTG--DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIK 766 + D ++ + G ++ Y T +F+ ++L PELL+G+Y F++PS IQ ++ I+ ++IAQA++G+GKT F + L ++DPNLKA QAL + PTRELA Q +V+ +G + EC TN K QVV+GTPG ++ Sbjct: 3 SNDKGLEEIPEGQIESNYDEITDSFDSMDLKPELLRGIYA-YGFERPSAIQQRAIMPIIKGS--DVIAQAQSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQKVVVAIGDFMSL--ECHACIGGTNVREDMKALQDGPQVVVGTPGRVQ 155
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17 Identity = 54/134 (40.30%), Postives = 79/134 (58.96%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 TFE +NL P+LLKG+Y F+ PS IQ+ ++ I++ R+ IAQA++G+GKT F +GML +D K QAL + PTRELAIQ V++ +G + I + + N K+ Q+V GTPG + Sbjct: 27 TFESMNLKPDLLKGIYA-YGFETPSAIQSRAIMQIISG--RDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACI--GGKNVGEDVKKLQQGQQIVSGTPGRV 155
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_MOUSE (Probable ATP-dependent RNA helicase DDX6 OS=Mus musculus GN=Ddx6 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17 Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 2 Query: 326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 + T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G ++ T TN R T VVI TPG I Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRI 226
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_HUMAN (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17 Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 2 Query: 326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 + T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G ++ T TN R T VVI TPG I Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRI 226
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17 Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 2 Query: 326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 + T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G ++ T TN R T VVI TPG I Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRI 226
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_NEUCR (ATP-dependent RNA helicase eIF4A OS=Neurospora crassa GN=tif-1 PE=3 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 3.248e-17 Identity = 53/134 (39.55%), Postives = 82/134 (61.19%), Query Frame = 2 Query: 362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 +F+++NL PELL+G+Y F++PS IQ ++ ++ ++IAQA++G+GKT F + +L ++DP+LKA QAL + PTRELA Q +V+ +G I EC T+ K QVV+GTPG + Sbjct: 25 SFDEMNLKPELLRGIYA-YGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVLQKIDPSLKACQALILAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTSVRDDMKALQDGPQVVVGTPGRV 153
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.248e-17 Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 2 Query: 326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 + T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G ++ T TN R T VVI TPG I Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRGDIMRLDDTVHVVIATPGRI 226
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17 Identity = 52/133 (39.10%), Postives = 84/133 (63.16%), Query Frame = 2 Query: 365 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 F+D+NL+ +LL+G++ F KPS IQ ++ I+ +++AQA++G+GKT F + L R+DP +KAPQAL + PTRELA+Q +V+ +G H I + T++V ++ AQ+V+GTPG + Sbjct: 25 FDDMNLNEKLLRGVF-GYGFNKPSAIQQRAIMPIIEG--NDVLAQAQSGTGKTGTFSIAALQRIDPAIKAPQALMLAPTRELALQIQKVVMALGFHMDIKVHACI--GGTSFVEDAEGLR-DAQIVVGTPGRV 151 The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 259
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bpback to top |