CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_XENTR (Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis GN=ddx6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.458e-17
Identity = 57/146 (39.04%), Postives = 83/146 (56.85%), Query Frame = 2
Query:  326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + T D   T    FED  L  ELL G++ EM ++KPS IQ  S+P+ L+   R+++A+A+NG+GK+  +++ +L R+D      QA+ I PTRELA+Q  ++  ++ KH G     A  T  TN      R   T  VVI TPG I
Sbjct:   84 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGVKVMAT-TGGTNLRDDIMRLDDTVHVVIATPGRI 225          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_XENLA (ATP-dependent RNA helicase ddx6 OS=Xenopus laevis GN=ddx6 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.458e-17
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + T D   T    FED  L  ELL G++ EM ++KPS IQ  S+P+ L+   R+++A+A+NG+GK+  +++ +L R+D      QA+ I PTRELA+Q  ++  ++ KH G  ++    T  TN      R   T  VVI TPG I
Sbjct:   84 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRI 225          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.904e-17
Identity = 58/158 (36.71%), Postives = 91/158 (57.59%), Query Frame = 2
Query:  302 AEDSSIKTVTTG--DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIK 766
            + D  ++ +  G  ++ Y   T +F+ ++L PELL+G+Y    F++PS IQ  ++  I+     ++IAQA++G+GKT  F +  L ++DPNLKA QAL + PTRELA Q  +V+  +G    +  EC      TN     K      QVV+GTPG ++
Sbjct:    3 SNDKGLEEIPEGQIESNYDEITDSFDSMDLKPELLRGIYA-YGFERPSAIQQRAIMPIIKGS--DVIAQAQSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQKVVVAIGDFMSL--ECHACIGGTNVREDMKALQDGPQVVVGTPGRVQ 155          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17
Identity = 54/134 (40.30%), Postives = 79/134 (58.96%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TFE +NL P+LLKG+Y    F+ PS IQ+ ++  I++   R+ IAQA++G+GKT  F +GML  +D   K  QAL + PTRELAIQ   V++ +G +  I +   +     N     K+     Q+V GTPG +
Sbjct:   27 TFESMNLKPDLLKGIYA-YGFETPSAIQSRAIMQIISG--RDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACI--GGKNVGEDVKKLQQGQQIVSGTPGRV 155          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_MOUSE (Probable ATP-dependent RNA helicase DDX6 OS=Mus musculus GN=Ddx6 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + T D   T    FED  L  ELL G++ EM ++KPS IQ  S+P+ L+   R+++A+A+NG+GK+  +++ +L R+D      QA+ I PTRELA+Q  ++  ++ KH G  ++    T  TN      R   T  VVI TPG I
Sbjct:   85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRI 226          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_HUMAN (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + T D   T    FED  L  ELL G++ EM ++KPS IQ  S+P+ L+   R+++A+A+NG+GK+  +++ +L R+D      QA+ I PTRELA+Q  ++  ++ KH G  ++    T  TN      R   T  VVI TPG I
Sbjct:   85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRI 226          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + T D   T    FED  L  ELL G++ EM ++KPS IQ  S+P+ L+   R+++A+A+NG+GK+  +++ +L R+D      QA+ I PTRELA+Q  ++  ++ KH G  ++    T  TN      R   T  VVI TPG I
Sbjct:   85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRI 226          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_NEUCR (ATP-dependent RNA helicase eIF4A OS=Neurospora crassa GN=tif-1 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.248e-17
Identity = 53/134 (39.55%), Postives = 82/134 (61.19%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +F+++NL PELL+G+Y    F++PS IQ  ++  ++     ++IAQA++G+GKT  F + +L ++DP+LKA QAL + PTRELA Q  +V+  +G    I  EC      T+     K      QVV+GTPG +
Sbjct:   25 SFDEMNLKPELLRGIYA-YGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVLQKIDPSLKACQALILAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTSVRDDMKALQDGPQVVVGTPGRV 153          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.248e-17
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  326 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + T D   T    FED  L  ELL G++ EM ++KPS IQ  S+P+ L+   R+++A+A+NG+GK+  +++ +L R+D      QA+ I PTRELA+Q  ++  ++ KH G  ++    T  TN      R   T  VVI TPG I
Sbjct:   85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRGDIMRLDDTVHVVIATPGRI 226          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 52/133 (39.10%), Postives = 84/133 (63.16%), Query Frame = 2
Query:  365 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            F+D+NL+ +LL+G++    F KPS IQ  ++  I+     +++AQA++G+GKT  F +  L R+DP +KAPQAL + PTRELA+Q  +V+  +G H  I     +    T++V  ++     AQ+V+GTPG +
Sbjct:   25 FDDMNLNEKLLRGVF-GYGFNKPSAIQQRAIMPIIEG--NDVLAQAQSGTGKTGTFSIAALQRIDPAIKAPQALMLAPTRELALQIQKVVMALGFHMDIKVHACI--GGTSFVEDAEGLR-DAQIVVGTPGRV 151          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
DDX6_XENTR1.458e-1739.04Probable ATP-dependent RNA helicase ddx6 OS=Xenopu... [more]
DDX6_XENLA1.458e-1738.36ATP-dependent RNA helicase ddx6 OS=Xenopus laevis ... [more]
IF4A_ASPCL1.904e-1736.71ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]
FAL1_CANAL2.487e-1740.30ATP-dependent RNA helicase FAL1 OS=Candida albican... [more]
DDX6_MOUSE2.487e-1738.36Probable ATP-dependent RNA helicase DDX6 OS=Mus mu... [more]
DDX6_HUMAN2.487e-1738.36Probable ATP-dependent RNA helicase DDX6 OS=Homo s... [more]
DDX6_CHICK2.487e-1738.36Probable ATP-dependent RNA helicase DDX6 OS=Gallus... [more]
IF4A_NEUCR3.248e-1739.55ATP-dependent RNA helicase eIF4A OS=Neurospora cra... [more]
DDX6_PONAB3.248e-1738.36Probable ATP-dependent RNA helicase DDX6 OS=Pongo ... [more]
IF4A_CANGA5.541e-1739.10ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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