CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.236e-17
Identity = 53/138 (38.41%), Postives = 83/138 (60.14%), Query Frame = 2
Query:  350 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            T    F+++ L  ELL+G+Y    F++PS IQA ++  ++     ++IAQA++G+GKT  F + +L R+DP++KA QAL + PTRELA Q  +V+  +G +  I  +C      TN      +    AQVV+GTPG +
Sbjct:   35 TVIDNFDNMELKEELLRGVYA-YGFERPSAIQARAIVPVIKG--HDVIAQAQSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKI--DCHACIGGTNVREDMAKLNEGAQVVVGTPGRV 167          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: CGH1_CAEEL (ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis elegans GN=cgh-1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.236e-17
Identity = 57/154 (37.01%), Postives = 87/154 (56.49%), Query Frame = 2
Query:  302 AEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            A+D   KT    DT       FED  L  +LL G++ E  ++KPS IQ  S+ + LT   ++++A+A+NG+GKT  + + ++ ++ P LKA QA+ I PTRELA+Q  ++  ++ KH  I  +  V T  T+      R   T  +VI TPG I
Sbjct:   27 AKDRRFKTADVTDT---KGVEFEDFCLGRDLLMGIF-EKGWEKPSPIQEASIGVALTG--QDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSKH--IQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRI 172          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16
Identity = 57/158 (36.08%), Postives = 89/158 (56.33%), Query Frame = 2
Query:  302 AEDSSIKTVTTG--DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIK 766
            + D  ++ +  G  ++ Y   T +F+ + L PELL+G+Y    F++PS IQ  ++  I+     ++IAQA++G+GKT  F +  L ++DPN+K  QAL + PTRELA Q  +V+  +G    I  EC      TN     K      QVV+GTPG ++
Sbjct:    3 SNDKGLEEIPEGQIESNYDEITDSFDSMELKPELLRGIYA-YGFERPSAIQQRAILPIIKG--NDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTNVREDMKALQEGPQVVVGTPGRVQ 155          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16
Identity = 58/157 (36.94%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  302 AEDSSIKTVTTG--DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            + D  ++ +  G  +T Y   T +F+ ++L PELL+G+Y    F++PS IQ  ++  I+     ++IAQA++G+GKT  F +  L ++D  LKA QAL + PTRELA Q  +V+  +G    I  EC      TN            QVV+GTPG I
Sbjct:    3 SNDKGLEEIPEGQIETNYDEVTDSFDSMDLKPELLRGVYA-YGFERPSAIQQRAIKPIIAG--HDVIAQAQSGTGKTATFSISALQKIDQELKACQALIVAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTNVRDDMNALRAGPQVVVGTPGRI 154          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16
Identity = 55/156 (35.26%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  296 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            D  ED  +K  T+     +S  TFE +NL  +LL+G+Y    F+ PS IQ+ ++  I++   +++IAQA++G+GKT  F +G+L  +D   K  QAL + PTRELA Q  +V++ +G +  + +  A+    T    + K      Q V GTPG +
Sbjct:    4 DREEDQKLKFKTSKKLKVSS--TFESMNLKDDLLRGIY-SYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNA-FAITGGKTLKDDLKKMQKHGCQAVSGTPGRV 153          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16
Identity = 55/156 (35.26%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  296 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            D  ED  +K  T+     +S  TFE +NL  +LL+G+Y    F+ PS IQ+ ++  I++   +++IAQA++G+GKT  F +G+L  +D   K  QAL + PTRELA Q  +V++ +G +  + +  A+    T    + K      Q V GTPG +
Sbjct:    4 DREEDQKLKFKTSKKLKVSS--TFESMNLKDDLLRGIY-SYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNA-FAITGGKTLKDDLKKMQKHGCQAVSGTPGRV 153          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.612e-16
Identity = 59/158 (37.34%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  293 LDEAEDSSIKTVTTGDTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +D+ EDS I      +T Y     TF+D+NL PELL+G+Y    F++PS IQ  ++  IL    R+++AQA++G+GKT  F + +L ++D +LK  QAL + PTRELA Q  +V+  +G    +  EC      T              VV+GTPG +
Sbjct:    2 VDQLEDSVI------ETNYDEVIDTFDDMNLKPELLRGIYA-YGFERPSAIQQRAIMPILGE--RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV--ECHACIGGTLVRDDMAALQAGVHVVVGTPGRV 148          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.612e-16
Identity = 54/134 (40.30%), Postives = 77/134 (57.46%), Query Frame = 2
Query:  362 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            TFE + L PELLKG+Y    F+ PS IQ+ ++  I++   R+ IAQA++G+GKT  F +GML  +D   K  QAL + PTRELA Q   V++ +G +  I +   +     N     KR     Q+V GTPG +
Sbjct:   27 TFESMRLKPELLKGIYA-YGFEAPSAIQSRAIMQIISG--RDTIAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYACI--GGKNVGTDIKRLQQGQQIVSGTPGRV 155          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.105e-16
Identity = 57/158 (36.08%), Postives = 90/158 (56.96%), Query Frame = 2
Query:  302 AEDSSIKTVTTG--DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIK 766
            + D  ++ +  G  ++ Y   T +F+ ++L PELL+G+Y    F++PS IQ  ++  I+     ++IAQA++G+GKT  F +  L ++DPN+K  QAL + PTRELA Q  +V+  +G    I  EC      TN     K      QVV+GTPG ++
Sbjct:    3 SNDKGLEEIPEGQIESNYDEITDSFDAMDLKPELLRGVYA-YGFERPSAIQQRAILPIIKG--NDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTNVREDMKALQEGPQVVVGTPGRVQ 155          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.105e-16
Identity = 52/137 (37.96%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  359 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTI 763
            TTF DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L+ +DP L+APQ L + PTRELA+Q  E + +  KH    +  A+       V +   ++ P   Q+V+GTPG +
Sbjct:    6 TTFADLGLKAPILEAL-TDLGYEKPSPIQAECIPHLLDG--RDVLGMAQTGSGKTAAFSLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRL 136          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
IF4A_USTMA7.236e-1738.41ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
CGH1_CAEEL7.236e-1737.01ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis... [more]
IF4A_NEOFI1.234e-1636.08ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
IF4A_ASPNC1.234e-1636.94ATP-dependent RNA helicase eIF4A OS=Aspergillus ni... [more]
FAL1_YEAST1.234e-1635.26ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS71.234e-1635.26ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
IF4A_SCHPO1.612e-1637.34ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]
FAL1_LODEL1.612e-1640.30ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]
IF4A_ASPFU2.105e-1636.08ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
DEAD_KLEPN2.105e-1637.96Cold-shock DEAD box protein A OS=Klebsiella pneumo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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