CB290558

Overview
NameCB290558
Unique NameCB290558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290558 vs. ExPASy Swiss-Prot
Match: GPI8_PONAB (GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.639e-22
Identity = 73/255 (28.63%), Postives = 119/255 (46.67%), Query Frame = 2
Query:   32 TMTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESS 778
            +++R AS +   LL++   +A            +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+  S++E       NI A  +S   E S
Sbjct:    6 SLSRAASTLAAVLLLSFGSVAASH---------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP--NIMALASSQVGEDS 232          
BLAST of CB290558 vs. ExPASy Swiss-Prot
Match: GPI8_HUMAN (GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.677e-22
Identity = 74/250 (29.60%), Postives = 116/250 (46.40%), Query Frame = 2
Query:   47 ASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESS 778
            A+ VL T+L+   G    S         +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+  S++E       NI A  +S   E S
Sbjct:   10 AATVLATVLLLSFGSVAASH--------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP--NIMALASSQVGEDS 232          
BLAST of CB290558 vs. ExPASy Swiss-Prot
Match: GPI8_BOVIN (GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.677e-22
Identity = 63/194 (32.47%), Postives = 99/194 (51.03%), Query Frame = 2
Query:  215 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESS 778
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G   + T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+  S++E       NI A  +S   E S
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPSSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP--NIMALASSQVGEDS 232          
BLAST of CB290558 vs. ExPASy Swiss-Prot
Match: GPI8_YEAST (GPI-anchor transamidase OS=Saccharomyces cerevisiae GN=GPI8 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.003e-21
Identity = 58/191 (30.37%), Postives = 104/191 (54.45%), Query Frame = 2
Query:  215 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH-PHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSW 781
            WAVL++ S  ++NYRH A++   Y+ +++ G+ D  II+ + DD+A N  N  PG + N+  H  D+Y   V  DY G +VTVENF  ++    T     S +++ +  N +IFI+ + HGG   L    +  I ++++ D  ++ +    Y  + F ++ C++ +++        NI A  +S  +ESS+
Sbjct:   39 WAVLVSTSRFWFNYRHMANVLSMYRTVKRLGIPDSQIILMLSDDVACNSRNLFPGSVFNNKDHAIDLYGDSVEVDYRGYEVTVENFIRLLTDRWTEDHPKSKRLL-TDENSNIFIYMTGHGGDDFLKFQDAEEIASEDIADAFQQMYEKKRYNEIFFMIDTCQANTMYSKFYSP--NILAVGSSEMDESSY 226          
BLAST of CB290558 vs. ExPASy Swiss-Prot
Match: GPI8_PIG (GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.976e-21
Identity = 63/194 (32.47%), Postives = 97/194 (50.00%), Query Frame = 2
Query:  215 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESS 778
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY    VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+  S++E       NI A  +S   E S
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYVVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP--NIMALASSQVGEDS 232          
BLAST of CB290558 vs. ExPASy Swiss-Prot
Match: GPI8_CAEEL (Putative GPI-anchor transamidase OS=Caenorhabditis elegans GN=T05E11.6 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.470e-20
Identity = 58/210 (27.62%), Postives = 108/210 (51.43%), Query Frame = 2
Query:  161 NGGGGAKVNDDDDSVG--TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSW 781
            N G   K+++  D+ G    WAVL+  S  ++NYRH +++   Y  +++ G+ D NII+ + +D+  N  NPRPG +     G ++Y   V  DY GE+VTVE+F  V+ G     T  S +++ +    ++ I+ + HGG   +    S  +   +L   ++       Y  ++   ++C S S++E +  +  N+ + ++S   E S+
Sbjct:   19 NTGLQLKIDELFDTPGHTNNWAVLVCTSKFWFNYRHVSNVLALYHSIKRLGIPDSNIIMMLAEDVPCNSRNPRPGTVYAARAGTNLYGSDVEVDYRGEEVTVESFIRVLTGRHHPATPRSKRLL-TDHQSNVLIYLTGHGGDSFMKFQDSEELTNVDLAYAIQTMFEDNRYHEMLVIADSCRSASMYEWI--DSPNVLSLSSSLTHEESY 225          
BLAST of CB290558 vs. ExPASy Swiss-Prot
Match: GPI8_SCHPO (GPI-anchor transamidase OS=Schizosaccharomyces pombe GN=gpi8 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.770e-18
Identity = 54/198 (27.27%), Postives = 103/198 (52.02%), Query Frame = 2
Query:  194 DDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVII-NHPHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSW 781
            + S    WAVL++ S  ++NYRH A++   Y+ +++ G+ D  II+ + DD A N  N  PG +  N     D+Y + +  DY G +VTVE F  ++       T  S +++ +    +I I+ + HGG G +    +  + +++L D +++ H    Y  ++F ++ C++ S++  +     N+ A  +S    SS+
Sbjct:   20 ESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILMIADDYACNSRNLFPGTVFDNADRALDLYGEEIEIDYKGYEVTVEAFIRLLTERVPENTPASKRLL-TNERSNILIYMTGHGGDGFIKFQDAEELSSEDLADAIEQIHQHKRYNEILFMVDTCQANSLYTKIYSP--NVLAIGSSEVGTSSY 214          
The following BLAST results are available for this feature:
BLAST of CB290558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GPI8_PONAB2.639e-2228.63GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE... [more]
GPI8_HUMAN7.677e-2229.60GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE... [more]
GPI8_BOVIN7.677e-2232.47GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2... [more]
GPI8_YEAST1.003e-2130.37GPI-anchor transamidase OS=Saccharomyces cerevisia... [more]
GPI8_PIG4.976e-2132.47GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2... [more]
GPI8_CAEEL2.470e-2027.62Putative GPI-anchor transamidase OS=Caenorhabditis... [more]
GPI8_SCHPO1.770e-1827.27GPI-anchor transamidase OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290558 ID=CB290558; Name=CB290558; organism=Citrus sinensis; type=EST; length=793bp
GCTCCAGCAACCAATCAACCCCCTTCAAAAAACCATGACGCGCCTTGCCT
CCGGCGTGCTAATCACGCTCCTAGTCGCTCTTGCAGGAATCGCCGATGGA
AGCAGAGACATAGCAGGTGACATTCTGAAGCTACCATCGGAAGCCTATAG
GTTCTTCCATAATGGTGGGGGAGGGGCAAAGGTCAACGATGATGATGATT
CTGTCGGCACGAGATGGGCCGTCCTGCTTGCCGGATCTAATGGCTTCTGG
AATTACAGGCATCAGGCTGATATTTGTCATGCTTATCAACTCTTGAGGAA
AGGTGGGCTGAAGGATGAAAATATTATTGTTTTCATGTATGATGACATCG
CTTTCAATGAAGAGAACCCAAGGCCTGGAGTCATCATTAACCACCCCCAT
GGCGATGATGTTTACAAAGGAGTTCCAAAGGATTACACGGGGGAAGATGT
TACTGTTGAAAACTTTTTTGCTGTTATCCTGGGAAATAAAACAGCTCTTA
CAGGGGGCAGTGGGAAGGTTGTGGATAGCGGCCCCAATGATCATATTTTC
ATATTCTACTCAGATCATGGTGGCCCTGGGGTGCTAGGGATGCCCACCAG
TCGATACATATATGCTGATGAACTGATCGATGTCTTAAAAAAGAAGCATG
CTTCTGGGAACTACAAAAGCTTGGTATTTTATCTCGAAGCCTGTGAATCT
GGAAGTATCTTTGAGGGTCTTCTTCCTGAGGGCTTAAATATCTATGCAAC
CACAGCTTCAAATGCTGAAGAGAGCAGTTGGGGGACCTATTGT
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