CB290567

Overview
NameCB290567
Unique NameCB290567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: LST2_DROSE (Lateral signaling target protein 2 homolog OS=Drosophila sechellia GN=GM10129 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = -2
Query:  451 WVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 627
            W+PD    +C AC T F+AF R+HHCRNCG +FC  C++    L      + VRVC  C
Sbjct:  892 WIPDGKAPRCMACQTPFTAFRRRHHCRNCGGVFCGVCSNASAPLPKYGLTKAVRVCRDC 950          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: LST2_DROPE (Lateral signaling target protein 2 homolog OS=Drosophila persimilis GN=GL23610 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 28/70 (40.00%), Postives = 39/70 (55.71%), Query Frame = -2
Query:  418 WVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRLSNA 627
            W+PD    +C +C T F+AF R+HHCRNCG +FC  C++    L      + VRVC  C     Q  S++
Sbjct:  914 WIPDGKAPRCMSCQTPFTAFRRRHHCRNCGGVFCGVCSNATAPLPKYGLTKAVRVCRDCYVREVQVRSSS 983          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: LST2_DROME (Lateral signaling target protein 2 homolog OS=Drosophila melanogaster GN=CG6051 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = -2
Query:  451 WVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 627
            W+PD    +C AC T F+AF R+HHCRNCG +FC  C++    L      + VRVC  C
Sbjct:  906 WIPDGKAPRCMACQTPFTAFRRRHHCRNCGGVFCGVCSNASAPLPKYGLTKAVRVCRDC 964          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: LST2_DROER (Lateral signaling target protein 2 homolog OS=Drosophila erecta GN=GG12136 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = -2
Query:  451 WVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 627
            W+PD    +C AC T F+AF R+HHCRNCG +FC  C++    L      + VRVC  C
Sbjct:  898 WIPDGKAPRCMACQTPFTAFRRRHHCRNCGGVFCGVCSNASAPLPKYGLTKAVRVCRDC 956          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: LST2_BRUMA (Lateral signaling target protein 2 homolog OS=Brugia malayi GN=Bm1_49520 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 32/86 (37.21%), Postives = 44/86 (51.16%), Query Frame = -2
Query:  370 WVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRLSNAKEMANKPALQSHEDLA 627
            WVPD    +CTAC   F+   R+HHCRNCG IFC +C+   + L      + VRVC+ C        S     +N  + Q+H  +A
Sbjct:  498 WVPDSDCEQCTACSAQFTLVRRRHHCRNCGRIFCSRCSANSLPLPELGYDRKVRVCNLCFLYKINPFSPCTGQSN--SSQNHSVIA 581          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: LST2_DROAN (Lateral signaling target protein 2 homolog OS=Drosophila ananassae GN=GF22946 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = -2
Query:  451 WVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 627
            W+PD    +C +C T F+AF R+HHCRNCG +FC  C++    L      + VRVC  C
Sbjct:  901 WIPDGKAPRCMSCQTPFTAFRRRHHCRNCGGVFCGVCSNASAPLPKYGLTKAVRVCREC 959          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: LST2_ANOGA (Lateral signaling target protein 2 homolog OS=Anopheles gambiae GN=AGAP003678 PE=3 SV=5)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 35/97 (36.08%), Postives = 47/97 (48.45%), Query Frame = -2
Query:  451 GRSRSSDSLKTAEQTGEQKKGFADWMNLMKPGNEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 741
            GRSRSS S      T +++              EE   W+PD    +C AC + F+ F R+HHCRNCG +FC  C++    L      + VRVC  C
Sbjct:  827 GRSRSSPSSPVNSNTQQRRMP------------EEPPRWIPDCDAPRCMACASAFTPFRRRHHCRNCGGVFCGVCSNLSKPLPKYGLTKAVRVCRDC 911          
The following BLAST results are available for this feature:
BLAST of CB290567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
LST2_DROSE6.723e-1145.76Lateral signaling target protein 2 homolog OS=Dros... [more]
LST2_DROPE6.723e-1140.00Lateral signaling target protein 2 homolog OS=Dros... [more]
LST2_DROME6.723e-1145.76Lateral signaling target protein 2 homolog OS=Dros... [more]
LST2_DROER6.723e-1145.76Lateral signaling target protein 2 homolog OS=Dros... [more]
LST2_BRUMA6.723e-1137.21Lateral signaling target protein 2 homolog OS=Brug... [more]
LST2_DROAN8.781e-1144.07Lateral signaling target protein 2 homolog OS=Dros... [more]
LST2_ANOGA8.781e-1136.08Lateral signaling target protein 2 homolog OS=Anop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cc07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290567 ID=CB290567; Name=CB290567; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTTTTTTAAAGGTAATCATAAAGTCAATAGAATTCACTGA
ACAGACCAAGAATAGATACTATACAAACTAATCCAAATTATTAATAATCA
CAAGCTGAACAAGTAAAATAAGTTCAACCAGAATTACTATAGATAAGGCG
TTCGGTAGCCTTCACCAGTTGTAAAAATCAATGAGCACTCACAAGGAAAG
GATGCTGGCAAACTCCACACTCAATAGTCTCAGAACCTGAGCTCGGTACT
TGGACCTGCAAATGGACAGTGCAAGTGGGACAAGCAACTTCCCTCATCCG
TCTACCAGATCCATCAGACTTGGATCCTGATGATGACTTGCGATTTTTCT
CCATTTCCTGAAGCTTCCTCGCAAGATCCTCATGACTCTGTAATGCAGGT
TTATTAGCCATTTCTTTAGCATTACTTAGCCTCTGAGTCACTTCCGCCAT
GCATCGGTCACAAACTCGAACCGGCTGAGCGTTCGCATCAGCAGTAAGAG
CAATCCTTCCGTGGGTACACTTGTCACAGAAAATATCACCACAGTTCCTG
CAGTGATGCTTGCGCACAAAAGCCGAAAAATCTGTCCCGCATGCTGTACA
CTTTGAAACAGCTTCATCAGGGACCCAATGATCTTTCTCCTCGTTGCCAG
GTTTCATCAAGTTCATCCAATCAGCAAAGCCTTTCTTCTGCTCCCCAGTC
TGTTCGGCTGTCTTCAAGGAATCAGAAGACCTGCTCCTTCCACCACCCAT
CTCCTTCAACTGTACAGTAGCAGCTGTCACTATGTCCAATAGGGTGGTGG
CAGTGTAACTATTTGATTGTAATCTAATACGTCTTGGTTCAATG
back to top