CB290568

Overview
NameCB290568
Unique NameCB290568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290568 vs. ExPASy Swiss-Prot
Match: RUFY2_HUMAN (RUN and FYVE domain-containing protein 2 OS=Homo sapiens GN=RUFY2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.128e-12
Identity = 37/113 (32.74%), Postives = 58/113 (51.33%), Query Frame = 1
Query:  256 LKEMGGGRSRSSDSLKTAEQTGEQKKGFADWMNLMKPGNEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRLSN 594
            L+E+G   S S   ++  ++  +  +G                 W+ D+  + C  C  +FS   RKHHCRNCG+IFC+ C+   + L   ++ +PVRVCD C A + QR S+
Sbjct:  557 LQELGNKLSESKLKIEDIKEANKALQGLV---------------WLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDNELPL--PSSPKPVRVCDSCHALLIQRCSS 652          
BLAST of CB290568 vs. ExPASy Swiss-Prot
Match: RUFY2_MOUSE (RUN and FYVE domain-containing protein 2 OS=Mus musculus GN=Rufy2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  388 WVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRLSN 594
            W+ D+  + C  C  +FS   RKHHCRNCG+IFC+ C+   + L   ++ +PVRVCD C A + QR S+
Sbjct:  537 WLKDKDATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDNELPL--PSSPKPVRVCDSCHAMLIQRCSS 603          
BLAST of CB290568 vs. ExPASy Swiss-Prot
Match: LST2_DROVI (Lateral signaling target protein 2 homolog OS=Drosophila virilis GN=GJ23073 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 1
Query:  388 WVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC-MAEVTQRLSNAKEMANKPALQS 630
            W+PD    +C +C T F+AF R+HHCRNCG +FC  C++    L      + VRVC  C + EV    + A   A++P   S
Sbjct:  969 WIPDGKAPRCMSCQTPFTAFRRRHHCRNCGGVFCGVCSNASAPLPKYGLTKAVRVCRECYVREVRSSRTQAHSQASRPQAAS 1050          
BLAST of CB290568 vs. ExPASy Swiss-Prot
Match: ZFY21_BOVIN (Zinc finger FYVE domain-containing protein 21 OS=Bos taurus GN=ZFYVE21 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 33/74 (44.59%), Postives = 40/74 (54.05%), Query Frame = 1
Query:  364 PGNEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQR 585
            P   E+  WVPD+   +C  C T F    RKHHCR CG  FCDKC   ++AL       PVR C  C A V++R
Sbjct:   33 PFGLEEPPWVPDKECPRCMQCDTKFDFLTRKHHCRRCGKCFCDKCCGQKVALRRMCFVDPVRQCAGC-APVSRR 105          
BLAST of CB290568 vs. ExPASy Swiss-Prot
Match: LST2_DROWI (Lateral signaling target protein 2 homolog OS=Drosophila willistoni GN=GK22512 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 42/139 (30.22%), Postives = 62/139 (44.60%), Query Frame = 1
Query:  160 SSVDIEPRRIRLQSNSYTATTLLDIVTAATVQLKEMGGGRSRSSDSLKTAEQTGE--QKKGFADWMNLMKPGNEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 570
            ++V+ E    R ++NS  + T     ++AT    E     S  S + +   Q+    Q    A        G      W+PD    +C +C T F+AF R+HHCRNCG +FC  C++    L      + VRVC  C A
Sbjct:  824 AAVNEEREMQRQRNNSVGSNTPSSASSSATSSSSEQNSPVSMRSGTGRRRHQSNNETQMPTTATTTTTTGTGTLAPPAWIPDGKAPRCMSCQTPFTAFRRRHHCRNCGGVFCGVCSNASAPLPKYGLTKAVRVCRDCYA 962          
BLAST of CB290568 vs. ExPASy Swiss-Prot
Match: LST2_CAEEL (Lateral signaling target protein 2 OS=Caenorhabditis elegans GN=lst-2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 1
Query:  388 WVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 564
            WVPDE   +CTAC   F+   R+HHCRNCG IFC KC+   I++      + VRVC+ C
Sbjct:  563 WVPDEDCEQCTACSMPFNFVRRRHHCRNCGRIFCHKCSCNTISIPEHGYDRKVRVCNLC 621          
BLAST of CB290568 vs. ExPASy Swiss-Prot
Match: LST2_CAEBR (Lateral signaling target protein 2 OS=Caenorhabditis briggsae GN=lst-2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 1
Query:  388 WVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 564
            WVPDE   +CTAC   F+   R+HHCRNCG IFC KC+   I++      + VRVC+ C
Sbjct:  554 WVPDEDCEQCTACSMPFNFVRRRHHCRNCGRIFCHKCSCNSISIPEHGYDRKVRVCNLC 612          
BLAST of CB290568 vs. ExPASy Swiss-Prot
Match: EEA1_HUMAN (Early endosome antigen 1 OS=Homo sapiens GN=EEA1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1
Query:  388 WVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 576
            W  D  V  C ACG  FS  VR+HHCR CG+IFC +C+  + ALT  ++ +PVRVCD C  ++
Sbjct: 1349 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECS-AKNALT-PSSKKPVRVCDACFNDL 1409          
BLAST of CB290568 vs. ExPASy Swiss-Prot
Match: MTMR3_RAT (Myotubularin-related protein 3 OS=Rattus norvegicus GN=Mtmr3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 31/93 (33.33%), Postives = 48/93 (51.61%), Query Frame = 1
Query:  340 ADWMNLMKPGNEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRLSNAKEMANKP 618
            A W  + K  + E   W+PD   + C AC + F    RKHHCRNCG++FC  C + ++ + +    +P RVC  C + +    S+     +KP
Sbjct: 1097 ASWEQVDKQ-DTEMTRWLPDHLAAHCYACDSAFWLASRKHHCRNCGNVFCSSCCNQKVPVPSQQLFEPSRVCKSCYSSLHPTSSSIDLELDKP 1188          
BLAST of CB290568 vs. ExPASy Swiss-Prot
Match: MTMR3_MOUSE (Myotubularin-related protein 3 OS=Mus musculus GN=Mtmr3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 31/93 (33.33%), Postives = 48/93 (51.61%), Query Frame = 1
Query:  340 ADWMNLMKPGNEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRLSNAKEMANKP 618
            A W  + K  + E   W+PD   + C AC + F    RKHHCRNCG++FC  C + ++ + +    +P RVC  C + +    S+     +KP
Sbjct: 1099 ASWEQVDKQ-DTEMTRWLPDHLAAHCYACDSAFWLASRKHHCRNCGNVFCSSCCNQKVPVPSQQLFEPSRVCKSCYSSLHPTSSSIDLELDKP 1190          
The following BLAST results are available for this feature:
BLAST of CB290568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RUFY2_HUMAN2.128e-1232.74RUN and FYVE domain-containing protein 2 OS=Homo s... [more]
RUFY2_MOUSE2.779e-1244.93RUN and FYVE domain-containing protein 2 OS=Mus mu... [more]
LST2_DROVI3.630e-1239.02Lateral signaling target protein 2 homolog OS=Dros... [more]
ZFY21_BOVIN8.086e-1244.59Zinc finger FYVE domain-containing protein 21 OS=B... [more]
LST2_DROWI1.056e-1130.22Lateral signaling target protein 2 homolog OS=Dros... [more]
LST2_CAEEL1.056e-1149.15Lateral signaling target protein 2 OS=Caenorhabdit... [more]
LST2_CAEBR1.056e-1149.15Lateral signaling target protein 2 OS=Caenorhabdit... [more]
EEA1_HUMAN1.801e-1149.21Early endosome antigen 1 OS=Homo sapiens GN=EEA1 P... [more]
MTMR3_RAT2.353e-1133.33Myotubularin-related protein 3 OS=Rattus norvegicu... [more]
MTMR3_MOUSE2.353e-1133.33Myotubularin-related protein 3 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290568 ID=CB290568; Name=CB290568; organism=Citrus sinensis; type=EST; length=852bp
GGTGGAGGCCAGAGTACCATGGACGTGCTCTGCCAGATTGGCTTGGATGG
AATTCGTATGCTTGATCCAAATACGAGCCGGACATTGAGAATATATCCTC
TTGAGAATATCACAAGATGTGAGCTTGCCGATTCATCTACCCTGGCATTC
TGGTCCAAGAGTTCCGTGGACATTGAACCAAGACGTATTAGATTACAATC
AAATAGTTACACTGCCACCACCCTATTGGACATAGTGACAGCTGCTACTG
TACAGTTGAAGGAGATGGGTGGTGGAAGGAGCAGGTCTTCTGATTCCTTG
AAGACAGCCGAACAGACTGGGGAGCAGAAGAAAGGCTTTGCTGATTGGAT
GAACTTGATGAAACCTGGCAACGAGGAGAAAGATCATTGGGTCCCTGATG
AAGCTGTTTCAAAGTGTACAGCATGCGGGACAGATTTTTCGGCTTTTGTG
CGCAAGCATCACTGCAGGAACTGTGGTGATATTTTCTGTGACAAGTGTAC
CCACGGAAGGATTGCTCTTACTGCTGATGCGAACGCTCAGCCGGTTCGAG
TTTGTGACCGATGCATGGCGGAAGTGACTCAGAGGCTAAGTAATGCTAAA
GAAATGGCTAATAAACCTGCATTACAGAGTCATGAGGATCTTGCGAGGAA
GCTTCAGGAAATGGAGAAAAATCGCAAGTCATCATCAGGATCCAAGTCTG
ATGGATCTGGTAGACGGATGAGGGAAGTTGCTTGTCCCACTTGCACTGTC
CATTTGCAGGTCCAAGTACCGAGCTCAGGTTCTGAGACTATTGAGTGTGG
AGTTTGCCAGCATCCTTTCCTTGTGAGTGCTCATTGATTTTTTACACTGG
TG
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