CB290579

Overview
NameCB290579
Unique NameCB290579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.123e-33
Identity = 84/214 (39.25%), Postives = 116/214 (54.21%), Query Frame = -3
Query:  290 EGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAINAVYMQ--TYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGV 919
            +G    VK QG+CGSCW+FS  GALE    L TGKLVSLS Q LVDC            + GCNGG M  AF+Y +   G+  E  YPY   D    C++D    AA+ + +  +    ++     V N GP++V I+A +     Y  GV     C++ ++HGVL+VGYG+       L  K YW++KNSWG  +G+ GY ++ R   N CG+
Sbjct:  124 KGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDC------STAKYGNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAMD--GKCQYDVKNRAATCSRYIELPFGSEEALKEAVANKGPVSVGIDASHSSFFLYKTGVYYDPSCTQNVNHGVLVVGYGN-------LDGKDYWLVKNSWGLHFGDQGYIRMARNSGNHCGI 322          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.196e-33
Identity = 80/204 (39.22%), Postives = 110/204 (53.92%), Query Frame = -3
Query:  290 VKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGV 901
            VK Q  CGSCW+FS    +E    +     + LSEQQLVDCD           ++GCNGGLM+ AFE  ++AGG+  E  YPYTG D    CK + ++       ++     E ++   L + GP++VAI+ V +  Y  GV+        L+HGVLLVGYG          +  YW +KNSWG  WGE G+++I R  N CG+
Sbjct:  148 VKMQKECGSCWAFSAVANIESLYHIKHNVSLDLSEQQLVDCD---------KVNNGCNGGLMSWAFEGIIRAGGISYEAPYPYTGVD--GVCK-NTTRYVQLSGCYAYDLRSEKKLRQVLHEKGPVSVAIDVVDLTNYKSGVAKHCSVDHGLNHGVLLVGYGQE-------NDVKYWTLKNSWGSDWGEQGFFRIKRDVNSCGI 332          

HSP 2 Score: 21.9422 bits (45), Expect = 1.196e-33
Identity = 7/15 (46.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  889 FDWRERGAVGPLKIR 933
            FDWR+R +V  +K++
Sbjct:  137 FDWRDRNSVTSVKMQ 151          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.467e-33
Identity = 83/217 (38.25%), Postives = 114/217 (52.53%), Query Frame = -3
Query:  284 REGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGV-SCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDS 922
            ++G   PV+ QG C +CW+F+ TGA+E      TGKL  LS Q LVDC            ++GC GG   +AF+Y L  GGL  E  YPY G D    C+++     A +  F  +   ED + A +   GP+   I+A +   + Y GG+   P   S  + HGVL+VGYG  G   I      YW+IKNSWG+ WG  GY K+ + + N CG+ S
Sbjct:  123 KKGYVTPVRRQGDCDACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKP-------QGNNGCLGGDTYNAFQYVLHNGGLESEATYPYEGKD--GPCRYNPKNSKAEITGFVSLPQSEDILMAAVATIGPITAGIDASHESFKNYKGGIYHEPNCSSDTVTHGVLVVGYGFKG---IETDGNHYWLIKNSWGKRWGIRGYMKLAKDKNNHCGIAS 327          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CYSP7_DICDI (Cysteine proteinase 7 OS=Dictyostelium discoideum GN=cprG PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.551e-33
Identity = 82/175 (46.86%), Postives = 107/175 (61.14%), Query Frame = -3
Query:  413 EGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGK--LVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGV-SCPYICSRRLDHGVLLVGYGS 919
            +G   P+K+QG CG CWSFSTTGA EGA +LA GK  LVSLSEQ L+DC            ++GC GGLM  AFEY +   G+  E  YPYT  D G  CKF+   +AA ++++ +V S  E  +AA  V  GP +VAI+A     Q Y+ G+ + P   S +LDHGVL VG+G+
Sbjct:  119 QGAVTPIKNQGQCGGCWSFSTTGATEGAQYLANGKKNLVSLSEQNLIDCSGSYG-------NNGCEGGLMTLAFEYIINNKGIDTESSYPYTAED-GKKCKFNPKNVAAQLSSYVNVTSGSESDLAAK-VTQGPTSVAIDASNQSFQLYVSGIYNEPACSSTQLDHGVLAVGFGT 284          

HSP 2 Score: 23.0978 bits (48), Expect = 1.551e-33
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = -1
Query:  895 DWRERGAVGPLK 930
            DWR +GAV P+K
Sbjct:  115 DWRTQGAVTPIK 126          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.915e-33
Identity = 80/205 (39.02%), Postives = 119/205 (58.05%), Query Frame = -3
Query:  290 PVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGV 904
            PVK+Q  CGSCW+FST   +E    +   K ++LSEQ LV+CD+          ++GC GGLM+ A E  L+ GG++  E+ PY G D    CK    +++ S +   V+  +E+++   LV NGP++VAI+   +  Y  G++     +  L+H VLLVGYG          + PYWI+KNSWG  WGE GY+++ R +N CG+
Sbjct:  138 PVKNQMECGSCWAFSTIANIESLYNIKYDKALNLSEQHLVNCDN---------INNGCAGGLMHWALESILQEGGVVSAENEPYYGFDG--VCKKSPFELSISGSRRYVLQ-NENKLRELLVVNGPISVAIDVSDLINYKAGIADICENNEGLNHAVLLVGYGVKN-------DVPYWILKNSWGAEWGEEGYFRVQRDKNSCGM 323          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.915e-33
Identity = 87/214 (40.65%), Postives = 118/214 (55.14%), Query Frame = -3
Query:  275 VKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVYMQT---YIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR-GRNVCGVDSMVS 901
            VK QGSCGSCW+FS  GALEG   L TGKLVSLS Q LVDC  E   E+ G  + GC GG M  AF+Y +    +  E  YPY   D    C +D    AA+ + +  +   DE+ +   +   GP++V I+     +   Y  GV     C+  ++HGVL+VGYG+       L  K YW++KNSWG  +G+ GY ++ R  +N CG+ S  S
Sbjct:  128 VKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSLSAQNLVDCSTE---EKYG--NKGCGGGFMTEAFQYIIDT-SIDSEASYPYKAMD--EKCLYDPKNRAATCSRYIELPFGDEEALKEAVATKGPVSVGIDDASHSSFFLYQSGVYDDPSCTENMNHGVLVVGYGT-------LDGKDYWLVKNSWGLHFGDQGYIRMARNNKNHCGIASYCS 326          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.267e-33
Identity = 81/224 (36.16%), Postives = 112/224 (50.00%), Query Frame = -3
Query:  290 EGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGV--SCPYICSRRL-DHGVLLVGY-----------GSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGV 919
            +G    VK Q SC  CW+ +  G +E    +   + V LS Q+L+DC         G C  GC GG +  AF   L   GL  E+DYP+ G  + H C   K    A + +F ++  +E +IA  L   GP+ V IN   ++ Y  GV  + P  C   L DH VLLVG+           G+AG  P   +  P+WI+KNSWG  WG  GY+++ RG N CG+
Sbjct:  138 DGVISSVKKQESCSCCWAMAAAGNIEALWAIKYRQSVELSVQELLDC---------GRCGDGCRGGFVWDAFITVLNNSGLASEKDYPFQGQVKPHRCLAKKRTKVAWIQDFIMLPDNEQKIAWYLATQGPITVTINMKLLKLYKKGVIEATPTSCDPFLVDHSVLLVGFGKSESVADRRAGAAGAQPQSRRSIPFWILKNSWGTKWGXGGYFRLYRGNNTCGI 352          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATK_CHICK (Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.267e-33
Identity = 87/221 (39.37%), Postives = 117/221 (52.94%), Query Frame = -3
Query:  275 REGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLV-KNGPLAVAINAVY--MQTYIGGVSCPYICS-RRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG-RNVCGVDSMVS 922
            R+G   PVKDQG CGSCW+FS+ GALEG     TGKL+SLS Q LV C          S ++GC GG M +AFEY     G+  E+ YPY G D   +C +  +  AA    +  +  D ++     V + GP++V I+A     Q Y  GV     C+   ++H VL VGYG+        K   +WIIKNSWG  WG  GY  + R  +  CG+ ++ S
Sbjct:  128 RKGYVTPVKDQGQCGSCWAFSSVGALEGQLKRRTGKLLSLSPQNLVYC---------VSNNNGCGGGYMTNAFEYVRLNRGIDSEDAYPYIGQD--ESCMYSPTGKAAKCRGYREIPEDNEKALKRAVARIGPVSVGIDASLPSFQFYSRGVYYDTGCNPENINHAVLAVGYGAQ-------KGTKHWIIKNSWGTEWGNKGYVLLARNMKQTCGIANLAS 330          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.888e-33
Identity = 76/221 (34.39%), Postives = 120/221 (54.30%), Query Frame = -3
Query:  275 EGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYY----KICRGRNVCGVDSMVS 919
            +G    +K+Q  CGSCW+FS   A+E  N + TG+L+SLSEQ+LVDCD         +   GCNGG MN+AF+Y +  GG+  +++YPY+      +CK  + ++  S+  F  V+ + +    + V + P++V + A     Q Y  G+     C    +HGV++VGYG+          K YWI++NSWG++WG  GY      +     +CG+  + S
Sbjct:   10 KGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCD---------TASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQ--GSCKPYRLRV-VSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTG-PCGTAQNHGVVIVGYGTQ-------SGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPS 210          

HSP 2 Score: 21.557 bits (44), Expect = 5.888e-33
Identity = 7/12 (58.33%), Postives = 9/12 (75.00%), Query Frame = -1
Query:  895 DWRERGAVGPLK 930
            DWR +GAV  +K
Sbjct:    6 DWRSKGAVNSIK 17          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CYSP4_DICDI (Cysteine proteinase 4 OS=Dictyostelium discoideum GN=cprD PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 7.572e-33
Identity = 78/175 (44.57%), Postives = 102/175 (58.29%), Query Frame = -3
Query:  413 EGRCRPVKDQGSCGSCWSFSTTGALEGANFLATG---KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICS-RRLDHGVLLVGYGS 919
            +G   P+K+QG CG CWSFSTTG+ EGA+F+A+G    LVSLSEQ L+DC            ++GC GGLM  AFEY +   G+  E  YPYT  D G  CKF  S I A + ++  V+   +    +   N P++VAI+A     Q Y  G+     CS  +LDHGVL+VGYGS
Sbjct:  120 QGAVTPIKNQGQCGGCWSFSTTGSTEGAHFIASGTKKDLVSLSEQNLIDCSKSYG-------NNGCEGGLMTLAFEYIINNKGIDTESSYPYTAED-GKECKFKTSNIGAQIVSYQNVTSGSEASLQSASNNAPVSVAIDASNESFQLYESGIYYEPACSPTQLDHGVLVVGYGS 286          

HSP 2 Score: 23.0978 bits (48), Expect = 7.572e-33
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = -1
Query:  895 DWRERGAVGPLK 930
            DWR +GAV P+K
Sbjct:  116 DWRAQGAVTPIK 127          
The following BLAST results are available for this feature:
BLAST of CB290579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
CATS_BOVIN1.123e-3339.25Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATV_GVXN1.196e-3339.22Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
CATR_MOUSE1.467e-3338.25Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CYSP7_DICDI1.551e-3346.86Cysteine proteinase 7 OS=Dictyostelium discoideum ... [more]
CATV_GVCP1.915e-3339.02Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATS_RAT1.915e-3340.65Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATW_FELCA3.267e-3336.16Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
CATK_CHICK4.267e-3339.37Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1[more]
ERVB_TABDI5.888e-3334.39Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]
CYSP4_DICDI7.572e-3344.57Cysteine proteinase 4 OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290579 ID=CB290579; Name=CB290579; organism=Citrus sinensis; type=EST; length=933bp
TTTTTTTTTTTTTTTTTCATGTCCTTGATCTGCCAAATTTATATAACGTC
AGATAACAGTCTTAATCTTACAACAAAGGAGTTCCACTTAATGACATAAT
TGAGACATTTCAGTTTGACACCCAGATGCAATAAGAAATCATTTCTTATG
CATTGAGGAAATTGTTTCAACATTAAAGTCGCATGCTTTATATACAAAAC
ATCCAATGGACCTGTATCTGCTACTATAACCTACTCCTTACTTGGAGTCA
GTCACGAACAGCAGCAGCTATGGTCGAAACCATGGAATCGACTCCACAGA
CGTTGCGACCCCTGCATATTTTGTAGTATCCGTTCTCTCCCCAGCTCTCA
CCCCATGAATTCTTGATGATCCAGTATGGCTTCTCCTTCAACCTGATTGG
AGCATAGCCAGCTGAACCGTATCCCACGAGCAACACTCCATGGTCCAATC
GCCTCGAGCATATGTATGGGCAGGAAACTCCCCCAATGTATGTCTGCATG
TACACGGCATTGATGGCCACTGCAAGGGGACCATTTTTCACAAGATTGGC
AGCAATTTGATCCTCATCAAGGGAGACAACACTGAAGTTGGCCACTGAGG
CAGCAATCTTACTCTTATCGAATTTGCAGGCGTGGCCACGATCAGTGCCG
GTGTAAGGATAGTCTTCCTCCCGCATAAGCCCACCAGCCTTGAGTGTGTA
CTCAAAAGCACTGTTCATAAGCCCACCATTGCATCCAGAATCACAAGAAC
CTGGTTCCTCAGGATCACACTCATGATCGCAATCCACAAGCTGTTGCTCA
CTGAGGCTCACAAGCTTTCCAGTTGCCAGGAAGTTAGCACCTTCCAAGGC
CCCTGTTGTACTGAAACTCCAGCATGATCCGCATGAACCCTGATCTTTAA
CGGGCCTACAGCGCCCCTCTCTCTCCAATCAAA
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