CB290579

Overview
NameCB290579
Unique NameCB290579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATL3_PARTE (Putative cathepsin L 3 OS=Paramecium tetraurelia GN=GSPATT00022199001 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.740e-18
Identity = 64/206 (31.07%), Postives = 101/206 (49.03%), Query Frame = -3
Query:  290 VKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGV--SCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGV 901
            VK+QG C S W+FS + +LE    +   + ++ S QQ+VDCD+          ++GC+GG    A EY L+  GL+   +YPY    +   CK  ++     +  +S V   +  +   L  N P++V + A   Q Y  G+  +C    S   +H  L VG+ SA            WI++NSWG  WGE+G  ++   +N CG+
Sbjct:  123 VKEQGQCASGWAFSVSNSLEAWYAIRGFQKINASTQQIVDCDYN---------NTGCSGGYNAYAMEYVLRV-GLVSSTNYPYVA--KNQTCKQSRNG-TYFINGYSFVGGSQSNLQYYL-NNYPISVGVEASNWQFYRSGLFSNC---SSNGTNHYALAVGFDSAN----------NWIVQNSWGTQWGESGNIRL-YPQNTCGI 300          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: YCF2E_CAEEL (Uncharacterized peptidase C1-like protein F26E4.3 OS=Caenorhabditis elegans GN=F26E4.3 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 8.638e-18
Identity = 76/236 (32.20%), Postives = 106/236 (44.92%), Query Frame = -3
Query:  278 PVKDQGSCGSCWSFSTTG-ALEGANFLATGKLVS-LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY-TGTDR--GHACKFDK----------------SKIAASVANFSVVSLDEDQIAANLVKNGPL-AVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSA---GYAPIRLKEKP--YWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 904
            PV DQG CGS WS STT  + +    ++ G++ S LS QQL+ C+             GC GG ++ A+ Y  K G ++ +  YPY +G  R  GH C   K                   A  +     VS  E+ I   L+ NGP+ A  +       Y GGV      + +     +  GY S    G+       KP  YW+  NSWG  WGE+GY+K+ RG N C ++S V
Sbjct:  200 PVADQGDCGSSWSVSTTAISSDRLAIISEGRINSTLSSQQLLSCNQHRQ--------KGCEGGYLDRAWWYIRKLG-VVGDHCYPYVSGQSREPGH-CLIPKRDYTNRQGLRCPSGSQDSTAFKMTPPYKVSSREEDIQTELMTNGPVQATFVVHEDFFMYAGGVYQHSDLAAQKGASSVAEGYHSVRVLGWGVDHSTGKPIKYWLCANSWGTQWGEDGYFKVLRGENHCEIESFV 425          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 8.638e-18
Identity = 71/241 (29.46%), Postives = 105/241 (43.57%), Query Frame = -3
Query:  278 VKDQGSCGSCWSFSTTGALEGANFLAT-GKL-VSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYT----LKAGGLMREED--YPYT--------------GTDRGHACKFDKSKIAASVANFSV----------VSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 901
            ++DQGSCGSCW+F    A+     + T G++ V +S + L+ C   C  +    C  GCNGG  + A+ +     L +GG+        PYT               T  G   K +K   A    ++            VS  E +I A + KNGP+  A        TY  GV           H + ++G+G     P       YW++ NSW   WG+NG++KI RG N CG++S +
Sbjct:   99 IRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTC---CGIQ----CGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGSRPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVP-------YWLVANSWNVDWGDNGFFKILRGENHCGIESEI 325          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATB3_GIALA (Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.128e-17
Identity = 76/228 (33.33%), Postives = 94/228 (41.23%), Query Frame = -3
Query:  278 EREGRCRP-VKDQGSCGSCWSFSTTGALEGANFLA--TGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGH--ACKF---DKSKIAASVANFSVVS--LDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 925
            E    C P V DQG CGSCW+FS+  ++      A    K V  S Q +V CD           D  C+GG + S + +  K G    +E  PY     G    C     D S +         V   LD   I   L   GPL  A   VY     Y  GV           H V +VGYG+            YWIIKNSWG  WGE+GY++I R  N CG++  V
Sbjct:   82 EEYPHCIPEVVDQGGCGSCWAFSSVASVGDRRCFAGLDKKAVKYSPQYVVSCDRG---------DMACDGGWLPSVWRFLTKTG-TTTDECVPYQSGSTGARGTCPTKCADGSDLPHLYKATKAVDYGLDAPAIMKALATGGPLQTAFT-VYSDFMYYESGVYQHTYGRVEGGHAVDMVGYGTDDDGV------DYWIIKNSWGPDWGEDGYFRIIRMTNECGIEEQV 292          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CYSP2_HAECO (Cathepsin B-like cysteine proteinase 2 OS=Haemonchus contortus GN=AC-2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.924e-17
Identity = 75/252 (29.76%), Postives = 113/252 (44.84%), Query Frame = -3
Query:  251 VKDQGSCGSCWSFSTTGALEGANFLATG--KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLK----AGGLMREED----YP-----------YTGTDRGHA--------CKFDKSKIAASVANFS----VVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAAAVRD 901
            ++DQ +CGSCW+ ST  A+     +A+   K V++S   ++ C   C P+    C  GC GG    A++Y +     +GG    +D    YP           Y G  RG A        C+    K+      +     +V      I + ++KNGP+ VA  AVY   + Y  G+        R  H V ++G+G+            +W+I NSW   WGE GY++I RG N CG++    TIAA + D
Sbjct:  105 IRDQANCGSCWAVSTAAAISDRICIASKAEKQVNISATDIMTC---CRPQ----CGDGCEGGWPIEAWKYFIYDGVVSGGEYLTKDVCRPYPIHPCGHHGNDTYYGECRGTAPTPPCKRKCRPGVRKMYRIDKRYGKDAYIVKQSVKAIQSEILKNGPV-VASFAVYEDFRHYKSGIYKHTAGELRGYHAVKMIGWGNEN-------NTDFWLIANSWHNDWGEKGYFRIVRGSNDCGIE---GTIAAGIVD 338          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.924e-17
Identity = 70/241 (29.05%), Postives = 104/241 (43.15%), Query Frame = -3
Query:  278 VKDQGSCGSCWSFSTTGALEGANFLAT-GKL-VSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLK----AGGLMREED--YPYT--------------GTDRGHACKFDKSKIAASVANFSV----------VSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 901
            ++DQGSCGSCW+F    A+     + T G++ V +S + L+ C   C  +    C  GCNGG  + A+ +  K    +GG+        PYT               T  G   + +KS  A    ++            VS    +I A + KNGP+  A        TY  GV           H + ++G+G     P       YW+  NSW   WG+NG++KI RG N CG++S +
Sbjct:   99 IRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAEDLLTC---CGIQ----CGDGCNGGYPSGAWSFWTKKGLVSGGVYNSHVGCLPYTIPPCEHHVNGSRPPCTGEGDTPRCNKSCEAGYSPSYKEDKHFGYTSYSVSNSVKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDMMGGHAIRILGWGVENGVP-------YWLAANSWNLDWGDNGFFKILRGENHCGIESEI 325          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.282e-17
Identity = 63/215 (29.30%), Postives = 91/215 (42.33%), Query Frame = -3
Query:  290 GRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA-VYMQTYIGGV-SCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR----GRNVCGV 916
            G    VK+Q  CG+CW+F+    +E    +  G L  LSEQQ++DC          +   GC GG    AFE+ +   G+     YPY        CK D    +A +  ++ V  + +      V   P+ VA++A    Q Y  GV + P  C   L+H V  +GYG               I    WG  WGE GY ++ R       +CG+
Sbjct:   12 GAVTSVKNQNPCGACWAFAAIATVESIYKIKKGILEPLSEQQVLDC----------AKGYGCKGGWEFRAFEFIISNKGVASGAIYPYKAAK--GTCKTDGVPNSAYITGYARVPRNNESSMMYAVSKQPITVAVDANANFQYYKSGVFNGP--CGTSLNHAVTAIGYGQDSI-----------IYPKKWGAKWGEAGYIRMARDVSSSSGICGI 201          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CYSP1_HAECO (Cathepsin B-like cysteine proteinase 1 OS=Haemonchus contortus GN=AC-1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.287e-17
Identity = 74/252 (29.37%), Postives = 113/252 (44.84%), Query Frame = -3
Query:  251 VKDQGSCGSCWSFSTTGALEGANFLATG--KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLK----AGGLMREED----YP-----------YTGTDRGHA--------CKFDKSKIAASVANFS----VVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAAAVRD 901
            ++DQ +CGSCW+ ST  A+     +A+   K V++S   ++ C   C P+    C  GC GG    A++Y +     +GG    +D    YP           Y G  RG A        C+    K+      +     +V      I + +++NGP+ VA  AVY   + Y  G+        R  H V ++G+G+            +W+I NSW   WGE GY++I RG N CG++    TIAA + D
Sbjct:  105 IRDQANCGSCWAVSTAAAISDRICIASKAEKQVNISATDIMTC---CRPQ----CGDGCEGGWPIEAWKYFIYDGVVSGGEYLTKDVCRPYPIHPCGHHGNDTYYGECRGTAPTPPCKRKCRPGVRKMYRIDKRYGKDAYIVKQSVKAIQSEILRNGPV-VASFAVYEDFRHYKSGIYKHTAGELRGYHAVKMIGWGNEN-------NTDFWLIANSWHNDWGEKGYFRIIRGTNDCGIE---GTIAAGIVD 338          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: PEPT1_DERFA (Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.550e-17
Identity = 61/211 (28.91%), Postives = 91/211 (43.13%), Query Frame = -3
Query:  287 PVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV----YMQTYIGGVSCPYICSRRLD-HGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVD 904
            P++ QG CGSCW+FS   A E A        + LSEQ+LVDC          +   GC+G  +    EY ++  G++ E  YPY    R   C+   S+         +   D  QI   L +       I  +      Q Y G     +    + + H V +VGYGS        +   YWI++NSW  +WG++GY     G N+  ++
Sbjct:  123 PIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC----------ASQHGCHGDTIPRGIEY-IQQNGVVEERSYPYVA--REQRCRRPNSQHYGISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGST-------QGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIE 313          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.629e-16
Identity = 69/245 (28.16%), Postives = 106/245 (43.27%), Query Frame = -3
Query:  278 VKDQGSCGSCWSFSTTGALEGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAG---GLMREEDY---PYTGTDRGH--------ACKFDKSKIAASV-----ANFSV--------------VSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 901
            ++DQ  CGSCW+F+   A      +A+   V+  LS + ++ C   C      +C  GC GG   +A++Y +K+G   G   E  +   PY+    G         +C  D     A V      N++V              V     QI A ++ +GP+  A   VY     Y  GV           H + ++G+G+    P       YW++ NSW  +WGENGY++I RG N CG++  V
Sbjct:  100 IRDQSDCGSCWAFAAAEAASDRFCIASNGAVNTLLSAEDVLSC---CS-----NCGYGCEGGYPINAWKYLVKSGFCTGGSYEAQFGCKPYSLAPCGETVGNVTWPSCPDDGYDTPACVNKCTNKNYNVAYTADKHFGSTAYAVGKKVSQIQAEIIAHGPVEAAFT-VYEDFYQYKTGVYVHTTGQELGGHAIRILGWGTDNGTP-------YWLVANSWNVNWGENGYFRIIRGTNECGIEHAV 328          
The following BLAST results are available for this feature:
BLAST of CB290579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
CATL3_PARTE1.740e-1831.07Putative cathepsin L 3 OS=Paramecium tetraurelia G... [more]
YCF2E_CAEEL8.638e-1832.20Uncharacterized peptidase C1-like protein F26E4.3 ... [more]
CATB_RAT8.638e-1829.46Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CATB3_GIALA1.128e-1733.33Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=... [more]
CYSP2_HAECO1.924e-1729.76Cathepsin B-like cysteine proteinase 2 OS=Haemonch... [more]
CATB_MOUSE1.924e-1729.05Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
BROM2_ANACO3.282e-1729.30Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CYSP1_HAECO4.287e-1729.37Cathepsin B-like cysteine proteinase 1 OS=Haemonch... [more]
PEPT1_DERFA9.550e-1728.91Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 P... [more]
CPR4_CAEEL3.629e-1628.16Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290579 ID=CB290579; Name=CB290579; organism=Citrus sinensis; type=EST; length=933bp
TTTTTTTTTTTTTTTTTCATGTCCTTGATCTGCCAAATTTATATAACGTC
AGATAACAGTCTTAATCTTACAACAAAGGAGTTCCACTTAATGACATAAT
TGAGACATTTCAGTTTGACACCCAGATGCAATAAGAAATCATTTCTTATG
CATTGAGGAAATTGTTTCAACATTAAAGTCGCATGCTTTATATACAAAAC
ATCCAATGGACCTGTATCTGCTACTATAACCTACTCCTTACTTGGAGTCA
GTCACGAACAGCAGCAGCTATGGTCGAAACCATGGAATCGACTCCACAGA
CGTTGCGACCCCTGCATATTTTGTAGTATCCGTTCTCTCCCCAGCTCTCA
CCCCATGAATTCTTGATGATCCAGTATGGCTTCTCCTTCAACCTGATTGG
AGCATAGCCAGCTGAACCGTATCCCACGAGCAACACTCCATGGTCCAATC
GCCTCGAGCATATGTATGGGCAGGAAACTCCCCCAATGTATGTCTGCATG
TACACGGCATTGATGGCCACTGCAAGGGGACCATTTTTCACAAGATTGGC
AGCAATTTGATCCTCATCAAGGGAGACAACACTGAAGTTGGCCACTGAGG
CAGCAATCTTACTCTTATCGAATTTGCAGGCGTGGCCACGATCAGTGCCG
GTGTAAGGATAGTCTTCCTCCCGCATAAGCCCACCAGCCTTGAGTGTGTA
CTCAAAAGCACTGTTCATAAGCCCACCATTGCATCCAGAATCACAAGAAC
CTGGTTCCTCAGGATCACACTCATGATCGCAATCCACAAGCTGTTGCTCA
CTGAGGCTCACAAGCTTTCCAGTTGCCAGGAAGTTAGCACCTTCCAAGGC
CCCTGTTGTACTGAAACTCCAGCATGATCCGCATGAACCCTGATCTTTAA
CGGGCCTACAGCGCCCCTCTCTCTCCAATCAAA
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