CB290579

Overview
NameCB290579
Unique NameCB290579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:480..1414. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 6.797e-39
Identity = 96/222 (43.24%), Postives = 125/222 (56.31%), Query Frame = -3
Query:  275 EGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASV---ANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRR---LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVS 919
            +G   PVKDQG CGSCW+FSTTG+LE A   ATGK VSLSEQQLVDC    +       + GC+GGL + AFEY    GGL  EE YPYTG +    C +    +   V    N ++ + DE + A  LV+  P++VA   +   + Y  GV     C      ++H VL VGYG            PYW+IKNSWG  WG+NGY+K+  G+N+CG+ +  S
Sbjct:  154 DGIVSPVKDQGHCGSCWTFSTTGSLEAAYTQATGKPVSLSEQQLVDCATAYN-------NFGCSGGLPSQAFEYIKYNGGLDTEEAYPYTGVN--GICHYKPENVGVKVLDSVNITLGAEDELKNAVGLVR--PVSVAFQVINGFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGV-------PYWLIKNSWGADWGDNGYFKMEMGKNMCGIATCAS 357          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.797e-39
Identity = 99/223 (44.39%), Postives = 126/223 (56.50%), Query Frame = -3
Query:  275 REGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASV---ANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICS---RRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVS 922
            ++G   PVK QG CGSCW+FSTTGALE A   A GK +SLSEQQLVDC    +       + GCNGGL + AFEY    GGL  EE YPYTG  +   CKF ++ I   V    N ++ +  E + A  LV+  P++VA   V   + Y  GV     C      ++H VL VGYG            PYW+IKNSWG  WGE+GY+K+  G+N+CGV +  S
Sbjct:  147 KDGIVSPVKAQGKCGSCWTFSTTGALEAAYAQAFGKGISLSEQQLVDCAGAFN-------NFGCNGGLPSQAFEYIKFNGGLDTEEAYPYTG--KNGICKFSQANIGVKVISSVNITLGAEYELKYAVALVR--PVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVE-------NGTPYWLIKNSWGADWGEDGYFKMEMGKNMCGVATCAS 351          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.877e-39
Identity = 90/215 (41.86%), Postives = 123/215 (57.21%), Query Frame = -3
Query:  275 PVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSR---RLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVS 904
            PVK+QG+CGSCW+FSTTGALE A  +A+GK+++L+EQQLVDC    +       + GC GGL + AFEY L   G+M E+ YPY G  +   CKF+  K  A V N   ++L DE  +   +    P++ A         Y  GV     C +   +++H VL VGYG             YWI+KNSWG +WG NGY+ I RG+N+CG+ +  S
Sbjct:  129 PVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEYILYNKGIMGEDSYPYIG--KNGQCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQ-------NGLLYWIVKNSWGSNWGNNGYFLIERGKNMCGLAACAS 327          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CYSEP_VIGMU (Vignain OS=Vigna mungo PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.978e-38
Identity = 92/222 (41.44%), Postives = 126/222 (56.76%), Query Frame = -3
Query:  275 REGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYK----ICRGRNVCGVDSMVS 922
            ++G    VKDQG CGSCW+FST  A+EG N + T KLVSLSEQ+LVDCD E         + GCNGGLM SAFE+  + GG+  E +YPYT  + G   +   + +A S+     V ++++      V N P++VAI+A     Q Y  GV     C+  L+HGV +VGYG+       +    YWI++NSWG  WGE GY +    I +   +CG+  M S
Sbjct:  136 KKGAVTDVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDKE--------ENQGCNGGLMESAFEFIKQKGGITTESNYPYTAQE-GTCDESKVNDLAVSIDGHENVPVNDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTG-DCNTDLNHGVAIVGYGTT------VDGTNYWIVRNSWGPEWGEQGYIRMQRNISKKEGLCGIAMMAS 341          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.515e-38
Identity = 88/216 (40.74%), Postives = 125/216 (57.87%), Query Frame = -3
Query:  257 VKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAAAV 901
            VKDQG CG+CW F++ GALE    +   +L+ LSEQQLVDCD           D GC+GGL+++A+E  +K GG+ +E DY Y        C     K A  V N +  V L+E+++   L   GP+A+A++AV +  Y GG+   +  +  L+H VLLVGYG            PYWIIKNSWG  +GE+GY ++ RG N CG+ + +++ A  V
Sbjct:  141 VKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCDF---------VDMGCDGGLIHTAYEQIMKMGGVEQEFDYSYKA--ERQPCALKPHKFATGVRNCYRYVILNEERLEDLLRYVGPIAIAVDAVDLTDYYGGI-VSFCENNGLNHAVLLVGYGVE-------NNVPYWIIKNSWGSDYGEDGYVRVRRGVNSCGMINELASSAQVV 337          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.814e-38
Identity = 84/225 (37.33%), Postives = 130/225 (57.78%), Query Frame = -3
Query:  260 EGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSK--IAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGV--SCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCG-VDSMVSTIAAA 919
            + +   +K+QG+CG+CW+F+T  ++E    +   +L+ LSEQQL+DCD         S D GCNGGL+++AFE  ++ GG+  E DYP+ G  R   C  D+ +  + + V  +  V ++E+++   L   GP+ +AI+A  +  Y  GV  SC    +  L+H VLLVGYG            PYW+ KN+WG+ WGENGY+++ +  N CG V+ + ST   A
Sbjct:  153 QNKVTSIKNQGACGACWAFATLASVESQFAMRHNRLIDLSEQQLIDCD---------SVDMGCNGGLLHTAFEEIMRMGGVQTELDYPFVG--RNRRCGLDRHRPYVVSLVGCYRYVMVNEEKLKDLLRAVGPIPMAIDAADIVNYYRGVISSCE---NNGLNHAVLLVGYGVENGV-------PYWVFKNTWGDDWGENGYFRVRQNVNACGMVNDLASTAVLA 356          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.814e-38
Identity = 86/208 (41.35%), Postives = 118/208 (56.73%), Query Frame = -3
Query:  290 PVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGV--SCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGV 904
            P+KDQG CGSCW+F   G +E    +   KL+ LSEQQL+DCD           D GCNGGLM+ AF+  L  GG+  E DYPY G+++   C  D  KIA  + + F     DE+++   +   GP+A+A++A+ +  Y  G+   C       L+H VLL+G+G            PYWIIKNSWGE WGENG+ ++ R  N CG+
Sbjct:  170 PIKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCD---------EVDLGCNGGLMHLAFQELLLMGGVETEADYPYQGSEQ--MCTLDNRKIAVKLNSCFKYDIRDENKLKELVYTTGPVAIAVDAMDIINYRRGILNQCHIY---DLNHAVLLIGWGIE-------NNVPYWIIKNSWGEDWGENGFLRVRRNVNACGL 356          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.814e-38
Identity = 81/212 (38.21%), Postives = 124/212 (58.49%), Query Frame = -3
Query:  290 REGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGV 922
            R  +   VK+QG CG+CW+F+T  +LE    +   +L++LSEQQL+DCD+          D+GCNGGL+++A+E  ++ GG+  E DYPY G+D    C+ D +K    V   +  +++ E+++   L   GP+ VAI+A  +  Y  G+   Y  +   +H VLLVGYG            PYWI+KN+WGE WGE GY+++ +  N CG+
Sbjct:  121 RLNKVTSVKNQGICGACWAFATLASLESQFAIKHNQLINLSEQQLIDCDY---------VDAGCNGGLLHTAYEAVMQMGGVQAENDYPYEGSDGN--CRVDVAKFVVKVKKCYRYIAVFEEKLKDLLRIVGPIPVAIDASDIVNYRRGI-MRYCSNYGFNHAVLLVGYGVE-------NNVPYWILKNTWGEDWGEQGYFRVQQNINACGI 313          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 1.142e-37
Identity = 85/205 (41.46%), Postives = 118/205 (57.56%), Query Frame = -3
Query:  311 EGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR 919
            +G    +KDQG CGSCW+FS   A+EG N + TG L+SLSEQ+LVDCD         S + GCNGGLM+ AF++ +  GG+  E+DYPY G D         +K+  ++ ++  V+ + +      V N P++VAI A     Q Y  G+     C   LDHGV  VGYG+          K YWI++NSWG+SWGE+GY ++ R
Sbjct:  138 KGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISLSEQELVDCD--------TSYNEGCNGGLMDYAFDFIINNGGIDTEDDYPYKGKDERCDVNRKNAKV-VTIDSYEDVTPNSETSLQKAVANQPVSVAIEAGGRAFQLYSSGIFTGK-CGTALDHGVAAVGYGTE-------NGKDYWIVRNSWGKSWGESGYVRMER 325          

HSP 2 Score: 21.1718 bits (43), Expect = 1.142e-37
Identity = 7/12 (58.33%), Postives = 9/12 (75.00%), Query Frame = -1
Query:  895 DWRERGAVGPLK 930
            DWR +GAV  +K
Sbjct:  134 DWRTKGAVAEIK 145          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.282e-37
Identity = 86/206 (41.75%), Postives = 119/206 (57.77%), Query Frame = -3
Query:  311 REGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR 922
            ++G    +KDQG+CGSCW+FST  A+EG N + TG+LVSLSEQ+LVDCD         S + GCNGGLM+ AF++ +K GGL  E+DYPY GT+ G      K+    ++  +  V   ++      V   P++VAI+A     Q Y  G+     C   +DH V+ VGYGS            YWI++NSWG  WGE+GY ++ R
Sbjct:  108 QKGAVNAIKDQGTCGSCWAFSTAAAVEGINKIVTGELVSLSEQELVDCDK--------SYNQGCNGGLMDYAFQFIMKNGGLNTEKDYPYHGTN-GKCNSLLKNSRVVTIDGYEDVPSKDETALKRAVSYQPVSVAIDAGGRAFQHYQSGIFTGK-CGTNMDHAVVAVGYGSENGV-------DYWIVRNSWGTRWGEDGYIRMER 296          
The following BLAST results are available for this feature:
BLAST of CB290579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
ORYC_ORYSJ6.797e-3943.24Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CYSP3_SOLLC6.797e-3944.39Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CATH_RAT8.877e-3941.86Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CYSEP_VIGMU1.978e-3841.44Vignain OS=Vigna mungo PE=1 SV=1[more]
CATV_NPVSE7.515e-3840.74Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATV_NPVLD9.814e-3837.33Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]
CATV_NPVHZ9.814e-3841.35Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATV_NPVHC9.814e-3838.21Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]
ORYA_ORYSJ1.142e-3741.46Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CYSP4_BRANA1.282e-3741.75Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290579 ID=CB290579; Name=CB290579; organism=Citrus sinensis; type=EST; length=933bp
TTTTTTTTTTTTTTTTTCATGTCCTTGATCTGCCAAATTTATATAACGTC
AGATAACAGTCTTAATCTTACAACAAAGGAGTTCCACTTAATGACATAAT
TGAGACATTTCAGTTTGACACCCAGATGCAATAAGAAATCATTTCTTATG
CATTGAGGAAATTGTTTCAACATTAAAGTCGCATGCTTTATATACAAAAC
ATCCAATGGACCTGTATCTGCTACTATAACCTACTCCTTACTTGGAGTCA
GTCACGAACAGCAGCAGCTATGGTCGAAACCATGGAATCGACTCCACAGA
CGTTGCGACCCCTGCATATTTTGTAGTATCCGTTCTCTCCCCAGCTCTCA
CCCCATGAATTCTTGATGATCCAGTATGGCTTCTCCTTCAACCTGATTGG
AGCATAGCCAGCTGAACCGTATCCCACGAGCAACACTCCATGGTCCAATC
GCCTCGAGCATATGTATGGGCAGGAAACTCCCCCAATGTATGTCTGCATG
TACACGGCATTGATGGCCACTGCAAGGGGACCATTTTTCACAAGATTGGC
AGCAATTTGATCCTCATCAAGGGAGACAACACTGAAGTTGGCCACTGAGG
CAGCAATCTTACTCTTATCGAATTTGCAGGCGTGGCCACGATCAGTGCCG
GTGTAAGGATAGTCTTCCTCCCGCATAAGCCCACCAGCCTTGAGTGTGTA
CTCAAAAGCACTGTTCATAAGCCCACCATTGCATCCAGAATCACAAGAAC
CTGGTTCCTCAGGATCACACTCATGATCGCAATCCACAAGCTGTTGCTCA
CTGAGGCTCACAAGCTTTCCAGTTGCCAGGAAGTTAGCACCTTCCAAGGC
CCCTGTTGTACTGAAACTCCAGCATGATCCGCATGAACCCTGATCTTTAA
CGGGCCTACAGCGCCCCTCTCTCTCCAATCAAA
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