CB290579

Overview
NameCB290579
Unique NameCB290579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:480..1414. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.954e-35
Identity = 77/220 (35.00%), Postives = 123/220 (55.91%), Query Frame = -3
Query:  266 REGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIA 922
            R  +   VK+QG CG+CW+F+T G+LE    +   + ++LSEQQL+DCD           D+GC+GGL+++AFE  +  GG+  E DYPY   +    C+ + +K    V   +  +++ E+++   L   GP+ VAI+A  +  Y  G+   Y  +  L+H VLLVGY             P+WI+KN+WG  WGE GY+++ +  N CG+ + + + A
Sbjct:  121 RLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNQFINLSEQQLIDCDF---------VDAGCDGGLLHTAFEAVMNMGGIQAESDYPYEANNGD--CRANAAKFVVKVKKCYRYITVFEEKLKDLLRSVGPIPVAIDASDIVNYKRGI-MKYCANHGLNHAVLLVGYAVENGV-------PFWILKNTWGADWGEQGYFRVQQNINACGIQNELPSSA 321          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.954e-35
Identity = 80/220 (36.36%), Postives = 123/220 (55.91%), Query Frame = -3
Query:  266 REGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIA 922
            R  +   VK+QG+CG+CW+F+T G+LE    +   +L++LSEQQL+DCD           D GC+GGL+++A+E  +  GG+  E DYPY   +    C+ + +K    V   +  V + E+++   L   GPL VAI+A  +  Y  GV   Y  +  L+H VLLVGY             P+WI+KN+WG  WGE GY+++ +  N CG+ + + + A
Sbjct:  121 RLNKVTSVKNQGTCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCDF---------VDMGCDGGLLHTAYEAVMNMGGIQAENDYPYEANNGD--CRLNAAKFVVKVKKCYRYVLMFEEKLKDLLRIVGPLPVAIDASDIVNYKRGV-IRYCANHGLNHAVLLVGYAVENGV-------PFWILKNTWGTDWGEQGYFRVQQNINACGIQNELPSSA 321          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATK_RABIT (Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.954e-35
Identity = 88/221 (39.82%), Postives = 122/221 (55.20%), Query Frame = -3
Query:  275 REGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSR-RLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 922
            ++G   PVK+QG CGSCW+FS+ GALEG     TGKL++LS Q LVDC  E         + GC GG M +AF+Y  +  G+  E+ YPY G D   +C ++ +  AA    +  +   +E  +   + + GP++VAI+A     Q Y  GV     CS   ++H VL VGYG         K   +WIIKNSWGESWG  GY  + R + N CG+ ++ S
Sbjct:  123 KKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE---------NYGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQD--ESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNVNHAVLAVGYGIQ-------KGNKHWIIKNSWGESWGNKGYILMARNKNNACGIANLAS 325          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CYSP1_HORVU (Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.776e-35
Identity = 88/215 (40.93%), Postives = 114/215 (53.02%), Query Frame = -3
Query:  293 REGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGH---ACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCG 922
            ++G    VKDQG CGSCW+FST  ++EG N + TG LVSLSEQ+L+DCD         + + GC GGLM++AFEY    GGL+ E  YPY    RG    A     S +   +     V  + ++  A  V N P++VA+ A       Y  GV     C   LDHGV +VGYG A         K YW +KNSWG SWGE GY ++ +     G
Sbjct:  142 QKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD--------TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAA-RGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTG-DCGTELDHGVAVVGYGVAE------DGKAYWTVKNSWGPSWGEQGYIRVEKDSGASG 340          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATV_NPVRO (Viral cathepsin OS=Rachiplusia ou multiple nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.776e-35
Identity = 77/220 (35.00%), Postives = 125/220 (56.82%), Query Frame = -3
Query:  266 REGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIA 922
            R  +   VK+QG CG+CW+F+T  +LE    +   +L++LSEQQ++DCD           D+GCNGGL+++AFE  +K GG+  E DYPY   +    C+ + +K    V + +  +++ E+++   L   GP+ +AI+A  +  Y  G+   Y  +  L+H VLLVGYG            PYW  KN+WG  WGE G++++ +  N CG+ + +++ A
Sbjct:  120 RLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCDF---------VDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEADNNN--CRMNTNKFLVQVKDCYRYITVYEEKLKDLLRLVGPIPMAIDAADIVNYKQGI-IKYCFNSGLNHAVLLVGYGVE-------NNIPYWTFKNTWGTDWGEEGFFRVQQNINACGMRNELASTA 320          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 7.776e-35
Identity = 86/220 (39.09%), Postives = 117/220 (53.18%), Query Frame = -3
Query:  275 REGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 922
            +EG   PV++QG CGSCW+F+  GA+EG  F  TG L  LS Q L+DC            ++GC  G  + AF Y LK  GL  E  YPY G D    C++     +A++  F  +  +E  +   +   GP++ AI+A +   + Y GGV     CS   ++H VL+VGYG  G          YW+IKNSWGE WG NG+ KI + R N CG+ S  S
Sbjct:  122 KEGYVTPVRNQGKCGSCWAFAAVGAIEGQMFSKTGNLTPLSVQNLLDC-------SKSEGNNGCRWGTAHQAFNYVLKNKGLEAEATYPYEGKD--GPCRYHSENASANITGFVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYSGGVYHEPNCSSYVVNHAVLVVGYGFEGN---ETDGNNYWLIKNSWGEEWGINGFMKIAKDRNNHCGIASQAS 329          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.326e-34
Identity = 81/211 (38.39%), Postives = 120/211 (56.87%), Query Frame = -3
Query:  290 VKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHAC-KFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR----GRNVCGV 901
            VKDQGSCGSCW+FS   A+E  N + TG L+SLSEQ+LVDCD         S + GC+GGLM+ AFE+ +K GG+  EEDYPY   +R   C ++ K+     + ++  V ++ ++     V + P+++A+ A     Q Y  G+     C   +DHGV++ GYG+            YWI++NSWG +  ENGY ++ R       +CG+
Sbjct:   33 VKDQGSCGSCWAFSAVAAMESINAIVTGNLISLSEQELVDCDR--------SYNEGCDGGLMDYAFEFVIKNGGIDTEEDYPY--KERNGVCDQYRKNAKVVKIDSYEDVPVNNEKALQKAVAHQPVSIALEAGGRDFQHYKSGIFTGK-CGTAVDHGVVIAGYGTE-------NGMDYWIVRNSWGANCRENGYLRVQRNVSSSSGLCGL 225          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.326e-34
Identity = 82/221 (37.10%), Postives = 114/221 (51.58%), Query Frame = -3
Query:  290 PVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGV--SCPYICSRRL-DHGVLLVGYG-------------SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGV 904
            P+KDQ +C  CW+ +  G +E    ++    V +S Q+L+DC         G C  GC+GG +  AF   L   GL  E+DYP+ G  R H C   K +  A + +F ++  +E +IA  L   GP+ V IN   +Q Y  GV  + P  C  +L DH VLLVG+G             S+   P      PYWI+KNSWG  WGE GY+++ RG N CG+
Sbjct:  143 PIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDC---------GRCGDGCHGGFVWDAFITVLNNSGLASEKDYPFQGKVRAHRCHPKKYQKVAWIQDFIMLQNNEHRIAQYLATYGPITVTINMKPLQLYRKGVIKATPTTCDPQLVDHSVLLVGFGSVKSEEGIWAETVSSQSQPQPPHPTPYWILKNSWGAQWGEKGYFRLHRGSNTCGI 354          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.732e-34
Identity = 89/218 (40.83%), Postives = 117/218 (53.67%), Query Frame = -3
Query:  275 GRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLV-KNGPLAVAINAVY-MQTYIGGVSCPYICS-RRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 916
            G    VKDQG+CGSCW+FSTTG +EG         +S SEQQLVDC            ++GC+GGLM +A++Y LK  GL  E  YPYT  +    C+++K    A V  +  V    +    NLV    P AVA++       Y  G+     CS  R++H VL VGYG+ G          YWI+KNSWG  WGE GY ++ R R N+CG+ S+ S
Sbjct:  118 GYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWG-------NNGCSGGLMENAYQY-LKQFGLETESSYPYTAVE--GQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQG-------GTDYWIVKNSWGTYWGERGYIRMARNRGNMCGIASLAS 318          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.263e-34
Identity = 80/220 (36.36%), Postives = 124/220 (56.36%), Query Frame = -3
Query:  266 REGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIA 922
            R  +   VK+QG CG+CW+F+T G+LE    +   +L++LSEQQL+DCD           D GC+GGL+++A+E  +  GG+  E DYPY   +    C+ + +K    V   +  V+L E+++   L   GP+ VAI+A  +  Y  G+   Y  +  L+H VLLVGYG            P+WI+KN+WG  WGE GY+++ +  N CG+ + + + A
Sbjct:  121 RLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCDF---------VDVGCDGGLLHTAYEAVMNMGGIQAENDYPYEANN--GPCRVNAAKFVVRVKKCYRYVTLFEEKLKDLLRIVGPIPVAIDASDIVGYKRGI-IRYCENHGLNHAVLLVGYGVENGI-------PFWILKNTWGADWGEQGYFRVQQNINACGIKNELPSSA 321          
The following BLAST results are available for this feature:
BLAST of CB290579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
CATV_NPVCF5.954e-3535.00Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CATV_NPVCD5.954e-3536.36Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CATK_RABIT5.954e-3539.82Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 ... [more]
CYSP1_HORVU7.776e-3540.93Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=E... [more]
CATV_NPVRO7.776e-3535.00Viral cathepsin OS=Rachiplusia ou multiple nucleop... [more]
CATJ_RAT7.776e-3539.09Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CYSPL_SOLLC1.326e-3438.39Low-temperature-induced cysteine proteinase (Fragm... [more]
CATW_HUMAN1.326e-3437.10Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CATLL_FASHE1.732e-3440.83Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CATV_NPVAP2.263e-3436.36Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cd02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290579 ID=CB290579; Name=CB290579; organism=Citrus sinensis; type=EST; length=933bp
TTTTTTTTTTTTTTTTTCATGTCCTTGATCTGCCAAATTTATATAACGTC
AGATAACAGTCTTAATCTTACAACAAAGGAGTTCCACTTAATGACATAAT
TGAGACATTTCAGTTTGACACCCAGATGCAATAAGAAATCATTTCTTATG
CATTGAGGAAATTGTTTCAACATTAAAGTCGCATGCTTTATATACAAAAC
ATCCAATGGACCTGTATCTGCTACTATAACCTACTCCTTACTTGGAGTCA
GTCACGAACAGCAGCAGCTATGGTCGAAACCATGGAATCGACTCCACAGA
CGTTGCGACCCCTGCATATTTTGTAGTATCCGTTCTCTCCCCAGCTCTCA
CCCCATGAATTCTTGATGATCCAGTATGGCTTCTCCTTCAACCTGATTGG
AGCATAGCCAGCTGAACCGTATCCCACGAGCAACACTCCATGGTCCAATC
GCCTCGAGCATATGTATGGGCAGGAAACTCCCCCAATGTATGTCTGCATG
TACACGGCATTGATGGCCACTGCAAGGGGACCATTTTTCACAAGATTGGC
AGCAATTTGATCCTCATCAAGGGAGACAACACTGAAGTTGGCCACTGAGG
CAGCAATCTTACTCTTATCGAATTTGCAGGCGTGGCCACGATCAGTGCCG
GTGTAAGGATAGTCTTCCTCCCGCATAAGCCCACCAGCCTTGAGTGTGTA
CTCAAAAGCACTGTTCATAAGCCCACCATTGCATCCAGAATCACAAGAAC
CTGGTTCCTCAGGATCACACTCATGATCGCAATCCACAAGCTGTTGCTCA
CTGAGGCTCACAAGCTTTCCAGTTGCCAGGAAGTTAGCACCTTCCAAGGC
CCCTGTTGTACTGAAACTCCAGCATGATCCGCATGAACCCTGATCTTTAA
CGGGCCTACAGCGCCCCTCTCTCTCCAATCAAA
back to top