CB290581

Overview
NameCB290581
Unique NameCB290581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6287 contig Csv1_Contig6287:1148..1918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -2
Query:  366 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMG 608
            +++   ++P   GE +I C+++ ++P V+  +G K +TLSPE Y LK  +    VC+SGFM  D+PPP GPLWILGDVF+G
Sbjct:  284 LHKAIGAVPLIQGEYMIPCEKVSSLPQVTLKLGGKDYTLSPEDYTLKVSQAGTTVCLSGFMGMDIPPPGGPLWILGDVFIG 364          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.770e-17
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -2
Query:  324 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIG 728
            +E   V  G S     C  A++     L    ++E  +  +N+     P   G+  I C + PT+P VSF +G   F L+ + Y++K  +    +C+ GF A D+P P GPLWILGDVF+G Y  VFD G   +G
Sbjct:  257 MESVKVGTGLSLCAQGCS-AILDTGTSLITGPSEE--IRALNKAIGGYPFLNGQYFIQCSKTPTLPPVSFHLGGVWFNLTGQDYVIKILQSDVGLCLLGFQALDIPKPAGPLWILGDVFLGPYVAVFDRGDKNVG 388          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: CATEB_XENLA (Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.679e-16
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = -2
Query:  318 GESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFA 572
            G+  +DC  +  MP ++FTI    + ++P+QY L+  +G   VC SGF   D+ PP GPLWILGDVF+G Y++VFD G  R+G A
Sbjct:  304 GDYEVDCTVLNKMPTMTFTINGIGYQMTPQQYTLQDDDG---VCSSGFQGLDISPPAGPLWILGDVFIGQYYSVFDRGNNRVGLA 385          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: CATE_RAT (Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.740e-16
Identity = 51/137 (37.23%), Postives = 72/137 (52.55%), Query Frame = -2
Query:  312 ENVSAGDSAV-CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEA 719
            + +  GD+ + CS    A+V     L     K+  +  + E   + P   GE  +DC  +  MPNV+F I    +TLSP  YIL       + C SGF   D+ PP GPLWILGDVF+  +++VFD G  ++G A A
Sbjct:  263 DGIQVGDTVMFCSEGCQAIVDTGTSLITGPPKK--IKQLQEAIGATPMD-GEYAVDCATLNMMPNVTFLINGVSYTLSPTAYILPDLVDGMQFCGSGFQGLDIQPPAGPLWILGDVFIRKFYSVFDRGNNQVGLAPA 396          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.884e-16
Identity = 48/132 (36.36%), Postives = 65/132 (49.24%), Query Frame = -2
Query:  309 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEAA 704
            G    CS    A+V     L    T    ++ I     +  N  GE ++ C  I T+PN+ FTI    + L P  Y+L++ +G    C SGF   D+P   G LWILGDVF+  Y TVFD G  ++G A  A
Sbjct:  261 GQVIACSGSCQAIVDTGTSLLSGPTN--AIASIQGYIGASQNANGEMVVSCSAINTLPNIVFTINGVQYPLPPSAYVLQSQQG----CTSGFQGMDIPTSSGELWILGDVFIRQYFTVFDRGNNQVGLAPVA 386          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.088e-15
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  312 GESII-DCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEA 572
            GE +  DC  I T+PNV+ T+  + F L+P++Y+L+  E     C+SGFM  +L    G  WILGDVF+  Y+TVFDFG  ++GFA A
Sbjct:  295 GEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVTEFGKTECLSGFMGIEL--NMGNFWILGDVFISAYYTVFDFGNKQVGFATA 380          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.421e-15
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = -2
Query:  312 GESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEA 572
            GE  ++C  +  MP+V+FTI    +TLSP  Y L       + C SGF   D+ PP GPLWILGDVF+  +++VFD G  R+G A A
Sbjct:  313 GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPA 399          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: RENI2_MOUSE (Renin-2 OS=Mus musculus GN=Ren2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.400e-15
Identity = 43/141 (30.50%), Postives = 74/141 (52.48%), Query Frame = -2
Query:  312 VEKENVSAGDSAVC--SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEA 728
            +  + VS G S +     CE+ V    + +    +  K+   I +   +    + E ++ C ++PT+P++SF +G + +TLS   Y+L+      ++C     A D+PPP GP+W+LG  F+  ++T FD    RIGFA A
Sbjct:  263 ITMKGVSVGSSTLLCEEGCEVVVDTGSSFISAPTSSLKL---IMQALGAKEKRLHEYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA 400          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: RENI_CANFA (Renin OS=Canis familiaris GN=REN PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 33/86 (38.37%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  312 ESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEA 569
            E +++C+++PT+P++SF +G + +TL+ + Y+L+   G  ++C       D+PPP GP+W+LG  F+  ++T FD    RIGFA A
Sbjct:  317 EYVVNCNQVPTLPDISFHLGGRAYTLTSKDYVLQDPYGNEDLCTLALHGLDVPPPTGPVWVLGASFIRKFYTEFDRHNNRIGFALA 402          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: RENI1_MOUSE (Renin-1 OS=Mus musculus GN=Ren1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.212e-15
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = -2
Query:  312 ESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEA 569
            E +++C ++PT+P++SF +G + +TLS   Y+L+      ++C     A D+PPP GP+W+LG  F+  ++T FD    RIGFA A
Sbjct:  316 EYVVNCSQVPTLPDISFDLGGRAYTLSSTDYVLQYPNRRDKLCTLALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA 401          
The following BLAST results are available for this feature:
BLAST of CB290581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CATD_SHEEP1.163e-1746.91Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
NAPSA_MOUSE5.770e-1735.56Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
CATEB_XENLA1.679e-1647.06Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=... [more]
CATE_RAT3.740e-1637.23Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3[more]
PEPA_RHIFE4.884e-1636.36Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ... [more]
CATD_DICDI1.088e-1546.59Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]
CATE_HUMAN1.421e-1545.98Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
RENI2_MOUSE5.400e-1530.50Renin-2 OS=Mus musculus GN=Ren2 PE=1 SV=1[more]
RENI_CANFA7.053e-1538.37Renin OS=Canis familiaris GN=REN PE=2 SV=1[more]
RENI1_MOUSE9.212e-1539.53Renin-1 OS=Mus musculus GN=Ren1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290581 ID=CB290581; Name=CB290581; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTTTGAAAAAACGAAGTCCAATGACCGTTATAAGATG
AAATTTCTCCAAATAAGTAAAACTATCACGCCAGAATATCATAAAATTAA
AGTACTTTAAACATAGGATGATAGGATTTTACATAAGTATATATCAGCAT
ATCATCTGTGGGGATGATGAAGATAGTTATGCATAAAAGCATACTGATCG
TTTTACAGTACATGAAAACCATAATCTACATTCTAGAACCCTCCTCCTCA
TATGAGCAGGTGATGATCGCTGCTACTACATAAAAACTTGACAGTAAGTA
GATCATTACGCAGCCTCAGCAAAGCCGATCCGGAGCTTACCAAAGTCGAA
AACAGTGTGATAAACCCCCATGAATACATCTCCCAGAATCCACAGAGGAC
CCCTTGGAGGAGGCAGGTCGAAAGCCATGAAGCCACTGATGCAGACTTCT
GCAATCCCTTCTCCGGTTTTCAAAATATACTGCTCTGGAGAGAGGGTGAA
AATTTTGTCTCCGATGGTGAATGAAACATTTGGCATGGTTGGAATGCGAT
CACAGTCAATAATTGATTCCCCCATCGGATTTGGCAGGCTGTCGCAGAGC
TCATTTATATAACTGAGTACTTTCTCCTTTGTTTGCTTTTGTTTTAGCTG
ATTCTGGACCCAAACCACGGCCATTTCACAAGCACTGCACACTGCACTAT
CCCCGGCTGATACGTTTTCCTTCTCAACCACGGTCTTGATCCCAGTACTC
ACATATTCAGCGCCATTGAAAGCACATAAACCAATCTGCTGACATACTTT
C
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