CB290581

Overview
NameCB290581
Unique NameCB290581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6287 contig Csv1_Contig6287:1148..1918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.571e-14
Identity = 47/132 (35.61%), Postives = 66/132 (50.00%), Query Frame = -2
Query:  309 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEAA 704
            G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++ FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD    ++G A  A
Sbjct:  260 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 385          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.571e-14
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = -2
Query:  309 IFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEAA 503
            +F L+PEQYILK   G A  CISGF A D     GPLWILGDVFM  YHTVFD+G L +GFAEAA
Sbjct:  205 VFGLTPEQYILK---GEATQCISGFTAMDATL-LGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 265          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.052e-14
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  312 GESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEA 572
            GE  ++C+ +  MP+V+F I    +TLS   Y L       + C SGF   D+ PP GPLWILGDVF+  +++VFD G  R+G A A
Sbjct:  308 GEYAVECENLNIMPDVTFVINGVPYTLSATAYTLPDFVDGMQFCGSGFQGLDIQPPAGPLWILGDVFIRQFYSVFDRGSNRVGLAPA 394          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: RENI_RAT (Renin OS=Rattus norvegicus GN=Ren1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.500e-14
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  312 IIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEA 563
            +++C ++PT+P++SF +G + +TLS   Y+ K      ++CI      D+PPP GP+W+LG  F+  ++T FD    RIGFA A
Sbjct:  318 VVNCSQVPTLPDISFYLGGRTYTLSNMDYVQKNPFRNDDLCILALQGLDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA 401          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.500e-14
Identity = 43/64 (67.19%), Postives = 46/64 (71.88%), Query Frame = -2
Query:  309 FTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEAA 500
            F L+PEQYILK   G A  CISGF A D     GPLWILGDVFM  YHTVFD+G L +GFAEAA
Sbjct:  207 FGLTPEQYILK---GEATQCISGFTAMDATL-LGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 266          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.500e-14
Identity = 43/64 (67.19%), Postives = 46/64 (71.88%), Query Frame = -2
Query:  309 FTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEAA 500
            F L+PEQYILK   G A  CISGF A D     GPLWILGDVFM  YHTVFD+G L +GFAEAA
Sbjct:  222 FGLTPEQYILK---GEATQCISGFTAMDATL-LGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 281          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: CARDE_CYNCA (Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.500e-14
Identity = 43/64 (67.19%), Postives = 46/64 (71.88%), Query Frame = -2
Query:  309 FTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEAA 500
            F L+PEQYILK   G A  CISGF A D     GPLWILGDVFM  YHTVFD+G L +GFAEAA
Sbjct:  165 FGLTPEQYILK---GEATQCISGFTAMDATL-LGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 224          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPA1_RABIT (Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.798e-14
Identity = 50/134 (37.31%), Postives = 69/134 (51.49%), Query Frame = -2
Query:  309 GDSAVCSACEMAVVWVQNQLKQKQTK--EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEAA 704
            G++  C+    AVV     L    T    K+ SYI     +  N +GE+II C  I ++P++ FTI +  + L    YILK  +     C+SGF   +L    G LWILGDVF+  Y TVFD    ++G A AA
Sbjct:  262 GETIACADSCQAVVDTGTSLLAGPTSAISKIQSYIG----ASKNLLGENIISCSAIDSLPDIVFTINNVQYPLPASAYILKEDDD----CLSGFDGMNLDTSYGELWILGDVFIRQYFTVFDRANNQVGLAAAA 387          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPA_SUNMU (Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.018e-13
Identity = 44/132 (33.33%), Postives = 63/132 (47.73%), Query Frame = -2
Query:  309 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEAA 704
            G +  CS    A+V     L         ++ I +   +  N  G+ ++ C  I ++P++ FTI    + L    YIL+  +     C SGF   D+P P G LWILGDVF+  Y  VFD G  R+G A  A
Sbjct:  262 GQAIACSGSCQAIVDTGTSLLSGPNN--AIANIQKSIGASQNANGQMVVSCSSIQSLPDIVFTINGIQYPLPASAYILQNQQD----CTSGFQGMDIPTPSGELWILGDVFIRQYFAVFDRGNNRVGLAPVA 387          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPA_CANFA (Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.018e-13
Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = -2
Query:  309 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEAA 704
            G +  CS    A+V     L    T    ++ I     +  N  G+ +I C  I ++P++ FTI    + L P  YIL++ +G    C+SGF   +LP   G LWILGDVF+  Y  VFD    ++G A  A
Sbjct:  261 GQAIACSDGCQAIVDTGTSLLAGPTN--AIANIQSYIGASQNSYGQMVISCSAINSLPDIVFTINGIQYPLPPSAYILQSQQG----CVSGFQGMNLPTASGELWILGDVFIRQYFAVFDRANNQVGLAPVA 386          
The following BLAST results are available for this feature:
BLAST of CB290581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
PEPA_PIG1.571e-1435.61Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]
CARDH_CYNCA1.571e-1466.15Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CATE_RABIT2.052e-1443.68Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]
RENI_RAT3.500e-1439.29Renin OS=Rattus norvegicus GN=Ren1 PE=2 SV=2[more]
CARDG_CYNCA3.500e-1467.19Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDF_CYNCA3.500e-1467.19Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDE_CYNCA3.500e-1467.19Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PEPA1_RABIT7.798e-1437.31Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPA_SUNMU1.018e-1333.33Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2[more]
PEPA_CANFA1.018e-1334.09Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290581 ID=CB290581; Name=CB290581; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTTTGAAAAAACGAAGTCCAATGACCGTTATAAGATG
AAATTTCTCCAAATAAGTAAAACTATCACGCCAGAATATCATAAAATTAA
AGTACTTTAAACATAGGATGATAGGATTTTACATAAGTATATATCAGCAT
ATCATCTGTGGGGATGATGAAGATAGTTATGCATAAAAGCATACTGATCG
TTTTACAGTACATGAAAACCATAATCTACATTCTAGAACCCTCCTCCTCA
TATGAGCAGGTGATGATCGCTGCTACTACATAAAAACTTGACAGTAAGTA
GATCATTACGCAGCCTCAGCAAAGCCGATCCGGAGCTTACCAAAGTCGAA
AACAGTGTGATAAACCCCCATGAATACATCTCCCAGAATCCACAGAGGAC
CCCTTGGAGGAGGCAGGTCGAAAGCCATGAAGCCACTGATGCAGACTTCT
GCAATCCCTTCTCCGGTTTTCAAAATATACTGCTCTGGAGAGAGGGTGAA
AATTTTGTCTCCGATGGTGAATGAAACATTTGGCATGGTTGGAATGCGAT
CACAGTCAATAATTGATTCCCCCATCGGATTTGGCAGGCTGTCGCAGAGC
TCATTTATATAACTGAGTACTTTCTCCTTTGTTTGCTTTTGTTTTAGCTG
ATTCTGGACCCAAACCACGGCCATTTCACAAGCACTGCACACTGCACTAT
CCCCGGCTGATACGTTTTCCTTCTCAACCACGGTCTTGATCCCAGTACTC
ACATATTCAGCGCCATTGAAAGCACATAAACCAATCTGCTGACATACTTT
C
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