CB290581

Overview
NameCB290581
Unique NameCB290581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6287 contig Csv1_Contig6287:1148..1918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPC_SUNMU (Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.124e-11
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = -2
Query:  309 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDFGKLRIGFAEAA 626
            ++ +S + +   +  +  G+  ++C+ I ++P ++F I    F L P  Y+L T       C  G     LP   G PLWILGDVF+  Y++V+D G  R+GFA AA
Sbjct:  287 QQFMSALQQATGAQQDQYGQLAVNCNSIQSLPTLTFIINGVQFPLPPSAYVLNTNG----YCFLGVEPTYLPSQNGQPLWILGDVFLRSYYSVYDMGNNRVGFATAA 389          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPA_CALJA (Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 41/132 (31.06%), Postives = 62/132 (46.97%), Query Frame = -2
Query:  309 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEAA 704
            G++  C+    A+V     L    T    ++ I     +  N  GE ++ C  I ++P++ FTI    + +    YIL+   G    C SGF   ++P   G LWILGDVF+  Y  VFD    ++G A  A
Sbjct:  262 GEAIACAEGCQAIVDTGTSLLSGPTSP--IANIQSYIGASENSNGEMVVSCSAISSLPDIVFTINGIQYPVPASAYILQDEGG----CTSGFQGMNIPTAYGELWILGDVFIRQYFAVFDRANNQVGLAPVA 387          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPA4_RABIT (Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 43/131 (32.82%), Postives = 63/131 (48.09%), Query Frame = -2
Query:  312 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEA 704
            G++  C+    A+V     L    T    +S I     +  N +GE++I C  I ++P++ FTI    + L    YILK  +     C SG    ++    G LWILGDVF+  Y TVFD    ++G A A
Sbjct:  262 GETIACADSCQAIVDTGTSLLTGPTS--AISNIQSYIGASKNLLGENVISCSAIDSLPDIVFTINGIQYPLPASAYILKEDDD----CTSGLEGMNVDTYTGELWILGDVFIRQYFTVFDRANNQLGLAAA 386          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPA2_RABIT (Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 43/131 (32.82%), Postives = 63/131 (48.09%), Query Frame = -2
Query:  312 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDFGKLRIGFAEA 704
            G++  C+    A+V     L    T    +S I     +  N +GE++I C  I ++P++ FTI    + L    YILK  +     C SG    ++    G LWILGDVF+  Y TVFD    ++G A A
Sbjct:  262 GETIACADSCQAIVDTGTSLLTGPTS--AISNIQSYIGASKNLLGENVISCSAIDSLPDIVFTINGIQYPLPASAYILKEDDD----CTSGLEGMNVDTYTGELWILGDVFIRQYFTVFDRANNQLGLAAA 386          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPC_MOUSE (Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 38/102 (37.25%), Postives = 56/102 (54.90%), Query Frame = -2
Query:  318 YINELCDSL---PNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDFGKLRIGFA 611
            Y+NEL  ++       G+  + CD + ++P ++F +    F LSP  YI++  EG    C+ G  +  L    G PLWILGDVF+  Y+ VFD G  R+G A
Sbjct:  292 YLNELLQTIGAQEGEYGQYFVSCDSVSSLPTLTFVLNGVQFPLSPSSYIIQE-EGS---CMVGLESLSLNAESGQPLWILGDVFLRSYYAVFDMGNNRVGLA 389          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = -2
Query:  318 GESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDFGKLRIGFA 572
            G  +++C+ I +MP ++F I      L P  Y+L         C  G     LP P G PLWILGDVF+  Y+TVFD    R+GFA
Sbjct:  306 GNFVVNCNSIQSMPTITFVISGSPLPLPPSTYVLNNNG----YCTLGIEVTYLPSPNGQPLWILGDVFLREYYTVFDMAANRVGFA 387          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPC_RAT (Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.070e-11
Identity = 35/102 (34.31%), Postives = 54/102 (52.94%), Query Frame = -2
Query:  318 YINELCDSL---PNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDFGKLRIGFA 611
            Y++EL  ++       GE  + CD + ++P +SF +    F LSP  YI++        C+ G  +  L    G PLWILGDVF+  Y+ +FD G  ++G A
Sbjct:  292 YLSELLQTIGAQEGEYGEYFVSCDSVSSLPTLSFVLNGVQFPLSPSSYIIQEDN----FCMVGLESISLTSESGQPLWILGDVFLRSYYAIFDMGNNKVGLA 389          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPC_MONDO (Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.070e-11
Identity = 35/89 (39.33%), Postives = 49/89 (55.06%), Query Frame = -2
Query:  309 GESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDFGKLRIGFAEAA 572
            G+ +++C+ I  MP ++F I    F L P  Y+          C  G  A  LP P G PLWILGDVF+  Y++V+D    R+GFA +A
Sbjct:  307 GDFMVNCNYIQDMPTITFVINGSQFPLPPSAYVFNNNG----YCRLGIEATYLPSPNGQPLWILGDVFLKEYYSVYDMANNRVGFAYSA 391          
BLAST of CB290581 vs. ExPASy Swiss-Prot
Match: PEPC_CAVPO (Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.070e-11
Identity = 40/104 (38.46%), Postives = 57/104 (54.81%), Query Frame = -2
Query:  309 LSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFTLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDFGKLRIGFAEAA 617
            LS + +   +  N  GE  + C  I  +P ++F I    F LSP  YIL +GE     C+ G  +  + P  G P+WILGDVF+  Y++V+D    R+GFA AA
Sbjct:  295 LSTLVQAIGAEENEYGEYFVSCSSIQDLPTLTFVISGVEFPLSPSAYIL-SGENY---CMVGLESTYVSPGGGEPVWILGDVFLRSYYSVYDLANNRVGFATAA 394          
The following BLAST results are available for this feature:
BLAST of CB290581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
PEPC_SUNMU2.124e-1134.58Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2[more]
PEPA_CALJA3.622e-1131.06Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1[more]
PEPA4_RABIT3.622e-1132.82Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPA2_RABIT3.622e-1132.82Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPC_MOUSE4.731e-1137.25Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1[more]
PEPB_CANFA4.731e-1140.70Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]
PEPC_RAT8.070e-1134.31Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1[more]
PEPC_MONDO8.070e-1139.33Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV... [more]
PEPC_CAVPO8.070e-1138.46Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290581 ID=CB290581; Name=CB290581; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTTTGAAAAAACGAAGTCCAATGACCGTTATAAGATG
AAATTTCTCCAAATAAGTAAAACTATCACGCCAGAATATCATAAAATTAA
AGTACTTTAAACATAGGATGATAGGATTTTACATAAGTATATATCAGCAT
ATCATCTGTGGGGATGATGAAGATAGTTATGCATAAAAGCATACTGATCG
TTTTACAGTACATGAAAACCATAATCTACATTCTAGAACCCTCCTCCTCA
TATGAGCAGGTGATGATCGCTGCTACTACATAAAAACTTGACAGTAAGTA
GATCATTACGCAGCCTCAGCAAAGCCGATCCGGAGCTTACCAAAGTCGAA
AACAGTGTGATAAACCCCCATGAATACATCTCCCAGAATCCACAGAGGAC
CCCTTGGAGGAGGCAGGTCGAAAGCCATGAAGCCACTGATGCAGACTTCT
GCAATCCCTTCTCCGGTTTTCAAAATATACTGCTCTGGAGAGAGGGTGAA
AATTTTGTCTCCGATGGTGAATGAAACATTTGGCATGGTTGGAATGCGAT
CACAGTCAATAATTGATTCCCCCATCGGATTTGGCAGGCTGTCGCAGAGC
TCATTTATATAACTGAGTACTTTCTCCTTTGTTTGCTTTTGTTTTAGCTG
ATTCTGGACCCAAACCACGGCCATTTCACAAGCACTGCACACTGCACTAT
CCCCGGCTGATACGTTTTCCTTCTCAACCACGGTCTTGATCCCAGTACTC
ACATATTCAGCGCCATTGAAAGCACATAAACCAATCTGCTGACATACTTT
C
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