CB290582

Overview
NameCB290582
Unique NameCB290582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290582 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.111e-48
Identity = 92/183 (50.27%), Postives = 122/183 (66.67%), Query Frame = 2
Query:  239 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 784
            +PL  FM+ QYFG IG+G+PPQNF+V+FDTGSSNLWVPS++C +FS++C+FH R+  + S+++   G    I YG+G +SG  SQ              F EA  E SL F LA FDGI+GLGF  +AVG   P  D MVEQGL+ + VFSF+LNRD +  +GGE+V GG DP H+    T++
Sbjct:   63 VPLSKFMNTQYFGTIGLGTPPQNFTVVFDTGSSNLWVPSTRCHFFSLACWFHHRFNPKASSSFRPNGTKFAIQYGTGRLSGILSQDNLTIGGIHDAFVTFGEALWEPSLIFALAHFDGILGLGFPTLAVGGVQPPLDAMVEQGLLEKPVFSFYLNRDSEGSDGGELVLGGSDPAHYVPPLTFI 245          
BLAST of CB290582 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 6.111e-48
Identity = 89/181 (49.17%), Postives = 122/181 (67.40%), Query Frame = 2
Query:  245 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 784
            LKN++DAQY+GEIG+G+PPQ F+V+FDTGSSNLWVPS  C    I+C  H +Y S KS+TY + G +  I YGSGS+SG+ SQ              F EA ++  + F+ A+FDGI+G+ +  I+V    PV+DN++ Q  V + VFSF+LNR+PD E GGE++ GG DPK++ G   YV
Sbjct:   68 LKNYLDAQYYGEIGLGTPPQPFTVVFDTGSSNLWVPSIHCSLLDIACLLHHKYNSGKSSTYVKNGTAFAIQYGSGSLSGYLSQDTCTIGDLAIDSQLFGEAIKQPGVAFIAAKFDGILGMAYPRISVDGVAPVFDNIMSQKKVEQNVFSFYLNRNPDTEPGGELLLGGTDPKYYTGDFNYV 248          
BLAST of CB290582 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.042e-47
Identity = 89/190 (46.84%), Postives = 132/190 (69.47%), Query Frame = 2
Query:  245 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXX---------FIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 784
            LKN++DAQY+G+IGIG+PPQ F+V+FDTGSSNLWVPS  C    I+C+ H +Y S KS+TY + G S +I+YGSGS+SG+ SQ                       F EAT++  + F+ A+FDGI+G+G+  I+V + +PV+DN+++Q LV + +FSF+LNRDP+ + GGE++ GG D K++ G+ +Y+
Sbjct:   71 LKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEATKQPGIVFVAAKFDGILGMGYPHISVNNVLPVFDNLMQQKLVDKNIFSFYLNRDPEGQPGGELMLGGTDSKYYHGELSYL 260          
BLAST of CB290582 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.173e-47
Identity = 89/187 (47.59%), Postives = 130/187 (69.52%), Query Frame = 2
Query:  245 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXX------FIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 784
            LKN++DAQY+GEIGIG+PPQ F+V+FDTGSSNLWVPS  C    I+C+ H +Y S KS+TY + G S +I+YGSGS+SG+ SQ                    F EAT++  + F+ A+FDGI+G+G+  I+V   +PV+DN+++Q LV + +FSF+LNRDP  + GGE++ GG D +++ G+ +Y+
Sbjct:   71 LKNYLDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDLGGIKVEKQIFGEATKQPGVVFIAAKFDGILGMGYPFISVNKVLPVFDNLMKQKLVEKNIFSFYLNRDPTGQPGGELMLGGTDSRYYHGELSYL 257          
BLAST of CB290582 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.757e-47
Identity = 94/203 (46.31%), Postives = 129/203 (63.55%), Query Frame = 2
Query:  188 AGVSGVRHRLG-DSDEDILP--LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFS-ISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 784
            AG + ++H  G  S     P  LKN+MDAQY+GEIG+G+P Q F+V+FDTGSSNLW+PS  C F+ I+C  H +Y   KS+TY + G    I YGSGS+SG+ SQ              F EA ++  + F+ A+FDGI+G+ +  I+V    PV+D M+ Q  V + VFSF+LNR+PD E GGE++ GG DPK++ G   YV
Sbjct:   46 AGTNSLQHNQGFPSSNAPTPETLKNYMDAQYYGEIGLGTPVQMFTVVFDTGSSNLWLPSIHCSFTDIACLLHHKYNGAKSSTYVKNGTEFAIQYGSGSLSGYLSQDSCTIGDIVVEKQLFGEAIKQPGVAFIAAKFDGILGMAYPRISVDGVPPVFDMMMSQKKVEQNVFSFYLNRNPDTEPGGELLLGGTDPKYYTGDFNYV 248          
BLAST of CB290582 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 7.470e-46
Identity = 88/185 (47.57%), Postives = 127/185 (68.65%), Query Frame = 2
Query:  245 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXX---------FIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG 769
            LKN+MDAQY+GEIGIG+PPQ F+V+FDTGS+NLWVPS  C    I+C+ H +Y S KS+TY + G + +I+YGSGS+SG+ SQ                       F EA ++  + F+ A+FDGI+G+ +  I+V + +PV+DN+++Q LV + VFSF+LNRDP A+ GGE++ GG D K+++G
Sbjct:   51 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWTHRKYNSDKSSTYVKNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDKNVFSFFLNRDPKAQPGGELMLGGTDSKYYRG 235          
BLAST of CB290582 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.707e-45
Identity = 88/189 (46.56%), Postives = 126/189 (66.67%), Query Frame = 2
Query:  245 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXX---------FIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTY 781
            L N+MDAQY+GEIGIG+PPQ F+V+FDTGS+NLWVPS  C    I+C+ H +Y S KS+TY + G + +I+YGSGS+SG+ SQ                       F EA ++  + F+ A+FDGI+G+ +  I+V + +PV+DN++ Q LV + VFSF+LNRDP A+ G E++ GG D K+++G  TY
Sbjct:   46 LTNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMAYPRISVNNVLPVFDNLMRQKLVDKNVFSFFLNRDPKAQPGEELMLGGTDSKYYRGSLTY 234          
BLAST of CB290582 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.324e-45
Identity = 88/183 (48.09%), Postives = 117/183 (63.93%), Query Frame = 2
Query:  239 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 784
            +PL N+ D QYFGEIG+G+PPQNF+V FDTGSSNLWVPS +C +FS+ C+ H R+  + S+++   G    I YG+G + G  S+              F EA  E SL F  A FDGI+GLGF  ++V    P  D +VEQGL+ + VFSF+LNRDP+  +GGE+V GG DP H+    T+V
Sbjct:   68 VPLSNYRDVQYFGEIGLGTPPQNFTVAFDTGSSNLWVPSRRCHFFSVPCWLHHRFDPKASSSFQANGTKFAIQYGTGRVDGILSEDKLTIGGIKGASVIFGEALWEPSLVFAFAHFDGILGLGFPILSVEGVRPPMDVLVEQGLLDKPVFSFYLNRDPEEPDGGELVLGGSDPAHYIPPLTFV 250          
BLAST of CB290582 vs. ExPASy Swiss-Prot
Match: CARP_NEUCR (Vacuolar protease A OS=Neurospora crassa GN=pep-4 PE=3 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.409e-44
Identity = 96/182 (52.75%), Postives = 119/182 (65.38%), Query Frame = 2
Query:  239 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 784
            +P+ NFM+AQYF EI IG+PPQ F V+ DTGSSNLWVPSS+C  SI+CY H++Y+S +S+TY + G S +I YGSGS+SGF SQ              F EAT E  L F   RFDGI+GLG+  IAV    P +  MVEQ LV E VFSF+L  D D E   E+VFGGV+   + GK T +
Sbjct:   75 VPITNFMNAQYFSEITIGTPPQTFKVVLDTGSSNLWVPSSQCG-SIACYLHNKYESSESSTYKKNGTSFKIEYGSGSLSGFVSQDRMTIGDITINDQLFAEATSEPGLAFAFGRFDGILGLGYDRIAVNGITPPFYKMVEQKLVDEPVFSFYL-ADQDGE--SEVVFGGVNKDRYTGKITTI 252          
BLAST of CB290582 vs. ExPASy Swiss-Prot
Match: RENI_CALJA (Renin OS=Callithrix jacchus GN=REN PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.099e-44
Identity = 91/213 (42.72%), Postives = 132/213 (61.97%), Query Frame = 2
Query:  155 RITRKERYMGGAGVSGVRHRLGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIVFGGVDPKHFKGKHTYV 784
            R + KER +  A +   R  L +    ++ L N+MD QY+GEIGIG+PPQ F V+FDTGSSN+WVPSSKC     +C +H  + +  S++Y   G    + Y +G++SGF SQ              F E T   +L F+LA FDG++G+GF E A+G   P++DN++ QGL+ E+VFSF+ NRD +  +  GG+IV GG DP+H++G   Y+
Sbjct:   43 RESLKERGVDMARLGPERMALVNITSSVI-LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQ-DVITVGGITVTQTFGEVTEMPALPFMLAEFDGVVGMGFSEQAIGKVTPLFDNIISQGLLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYI 253          
The following BLAST results are available for this feature:
BLAST of CB290582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NAPSA_MOUSE6.111e-4850.27Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
CATD_CHIHA6.111e-4849.17Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
CATD_MOUSE1.042e-4746.84Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_RAT5.173e-4747.59Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_CLUHA6.757e-4746.31Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_BOVIN7.470e-4647.57Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATD_SHEEP3.707e-4546.56Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
NAPSA_HUMAN6.324e-4548.09Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CARP_NEUCR1.409e-4452.75Vacuolar protease A OS=Neurospora crassa GN=pep-4 ... [more]
RENI_CALJA4.099e-4442.72Renin OS=Callithrix jacchus GN=REN PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290582 ID=CB290582; Name=CB290582; organism=Citrus sinensis; type=EST; length=784bp
GCACTAGGAGAACATCATGGAGCAGAAACTTCTTCGGTCAGTTTTCTGTT
TATGGGTGCTAGCGTCGTGCTTGCTTCTTCCTGCTTCCTCTAATGGCTTA
CGGAGAATTGGCTTGAAGAAGCGGCGACTAGATCTTCATAGTCTAAATGC
TGCAAGAATAACAAGAAAAGAGCGATATATGGGGGGAGCAGGTGTTAGTG
GCGTGCGCCATCGTTTGGGTGATTCAGATGAAGATATATTGCCTTTGAAG
AACTTTATGGATGCTCAATACTTTGGAGAGATTGGTATTGGCTCTCCCCC
ACAAAATTTCAGTGTCATATTTGATACCGGCAGTTCCAATCTCTGGGTTC
CATCTTCAAAGTGCTATTTCTCTATTTCCTGCTATTTCCATTCGAGGTAC
AAGTCCAGAAAATCCAATACATATACCGAAATTGGAAAATCCTGTGAAAT
AAACTATGGATCTGGATCAATTTCTGGCTTCTTCAGTCAAGACAATGTTG
AAGTTGGGGATGTTGTTGTCAAGGATCAGGTTTTCATTGAGGCTACACGA
GAAGGGAGTCTCACTTTTCTATTGGCAAGGTTTGATGGAATAATAGGGCT
TGGGTTCCGGGAAATTGCAGTTGGGGATGCTGTGCCTGTGTGGGACAATA
TGGTTGAGCAGGGCCTTGTAAGCGAGGAGGTCTTCTCATTCTGGCTCAAC
AGGGATCCAGACGCTGAAGAGGGTGGAGAGATTGTTTTTGGTGGTGTTGA
TCCAAAGCACTTTAAAGGGAAGCATACCTATGTT
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