CB290612

Overview
NameCB290612
Unique NameCB290612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13215 contig Csv1_Contig13215:1..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.274e-25
Identity = 60/118 (50.85%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   65 LKLACAVLLMC-MVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI--RNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            LKL C V +MC M +G P A AAV+CGQV ++L  C+              CC+G++SL S A TT DRQS+CNCLK A   I   N N  LA+GLP +CGVNIPY+ISPS DC  ++
Sbjct:    8 LKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPS--CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 60/117 (51.28%), Postives = 79/117 (67.52%), Query Frame = 2
Query:   59 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            MA+ + CA +  CMV+GAP  +A ++CGQV+SSL  C+              CCSG+KSLNSAA TTPDRQ+ C CLK+A  SI  +N   A+  P +CGV+IPY+ISPS DCS+V+
Sbjct:    4 MAMMVLCAGVT-CMVVGAPYTEA-LSCGQVSSSLAPCISYLTKGGAVPPA--CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.173e-25
Identity = 56/118 (47.46%), Postives = 78/118 (66.10%), Query Frame = 2
Query:   56 YMALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            Y A+     V+ +CMV+  PIAQA +TCGQV+S+L  C+              CC+GI+++N+ A TTPDRQ+ CNCLK  + S+  +N N A+ LP +CGVNIPYQISPS +C+ V+
Sbjct:    3 YSAMTKLALVVALCMVVSVPIAQA-ITCGQVSSNLAPCIPYVRGGGAVPPA--CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 2
Query:   47 RTLYMALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 406
            R++ +A+ +A       +V+ A  ++AAVTCGQV+S++  C+              CCSG++SLNSAA TT DR++ CNCLK AA  IR LN+  A+ +P +CGV+IPY IS S DCSRV
Sbjct:    3 RSMKLAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAG-CCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.137e-24
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 2
Query:   59 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            M+LKLAC V+L C+++ AP+AQ A++  QV SSL  C+               C GI+SL SAA    DRQ+ C C+K+ A  I ++N  +A+GLP QC V+IPY+ISPS+DC RV+
Sbjct:    5 MSLKLACVVVL-CLLVDAPLAQGAISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.352e-24
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = 2
Query:   59 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            M  K+AC VLL CMV+ AP A+A +TCGQVT+ L  C+              CC G+K+L  +A TT DR++ C CLK+AA +I+ ++LN A+G+P  C VNIPY+ISPS DCS V+
Sbjct:    3 MVSKIACFVLL-CMVVVAPHAEA-LTCGQVTAGLAPCLPYLQGRGPLGG---CCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 2
Query:   59 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            M  K+AC VLL CMV+ AP A+A +TCGQVT+ L  C+              CC G+K L  +A TT DR++ C CLK+AA +I+ ++LN A+G+P  C VNIPY+ISPS DCS V+
Sbjct:    3 MVSKIACFVLL-CMVVVAPHAEA-LTCGQVTAGLAPCLPYLQGRGPLGG---CCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24
Identity = 51/110 (46.36%), Postives = 73/110 (66.36%), Query Frame = 2
Query:   80 AVLLMCMVMGA-PIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 406
            A+++M MV+   P A+A +TCGQVT +L  C+              CC+ ++ LN+AA TT D+++ C CLK  A ++  LNLN A+GLP +CGVNIPY+ISP+ DC+RV
Sbjct:   10 AMMVMYMVLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  131 VTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            +TCGQV+SSL  C+              CC+G++SLN+AA TT DRQ+ CNCLK+A  SI+ LNLNLA+GLP +CGV++PY+ISPS DC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPAN--CCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 60/117 (51.28%), Postives = 74/117 (63.25%), Query Frame = 2
Query:   59 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            M  K+AC VLL CMV+ AP A+A +TCGQVTS+L  C+              CC G+K L   A TT DRQ+ C CLK+AA S   L+L  A+ LP  C VNIPY+ISPS DCS+V+
Sbjct:    3 MVNKIACFVLL-CMVVVAPHAEA-LTCGQVTSTLAPCLPYLMNRGPLGG---CCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
The following BLAST results are available for this feature:
BLAST of CB290612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP3_PRUDU1.274e-2550.85Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP_HELAN1.664e-2551.28Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU2.173e-2547.46Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP2_SORBI4.840e-2546.67Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP6_GOSHI3.137e-2447.01Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP1_SOLLC5.352e-2449.57Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_SOLPN6.989e-2449.57Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP_DAUCA9.128e-2446.36Non-specific lipid-transfer protein OS=Daucus caro... [more]
LTP1_MORNI9.128e-2454.84Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP2_SOLPN1.192e-2351.28Non-specific lipid-transfer protein 2 OS=Solanum p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ce08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ce08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290612 ID=CB290612; Name=CB290612; organism=Citrus sinensis; type=EST; length=625bp
GAAAAGTTCCAAGTTAAGCAACATTCTCATTTCTCAGAGCTAATTAAGAA
CATTATACATGGCTCTTAAGCTTGCTTGTGCTGTGCTGCTAATGTGCATG
GTGATGGGTGCGCCCATTGCCCAAGCTGCCGTCACATGTGGCCAAGTGAC
AAGCTCTCTTCAAGCGTGCATGCCATATGTGACGGGCCCCGGTGGAGGCG
CTGTGCCGCCAGCCTGCTGTAGCGGGATTAAGAGTCTTAACTCCGCAGCC
ACCACCACACCCGACCGCCAGAGCGTTTGCAACTGCTTGAAAACCGCTGC
TGGCTCCATCAGAAACCTCAACCTCAACCTCGCTTCTGGCCTCCCACGCC
AGTGTGGCGTCAACATTCCTTACCAAATCAGCCCATCCGTTGACTGCAGC
AGAGTGAGATGAAGATCTTGGAAAAGAGAATATATGCTGAAGTATTATTA
TATATAATATGAATATAAAATGGAATAATAAAGTGGGTGATATGGACTCT
CCTAGGTCAAGAGAGTATTAGTACTATGCATCTATCATATATGTACCAGA
GTGTCATCCACCGAGTCCCTTGCCACGATTCTCATATATAATATACTACT
TTGTTATTTAAAAAAAAAAAAAAAA
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