CB290612

Overview
NameCB290612
Unique NameCB290612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.240e-21
Identity = 53/116 (45.69%), Postives = 71/116 (61.21%), Query Frame = 2
Query:   65 LKLACAVLLMCMVMGAPI-AQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            +KLAC VL  CM++  PI + AA++CG V+  +  C+              CC+G+ +LN+ A TTPDRQ  C CL  AA S   LN   A+GLP+ CGVNIPY+IS S +C+ VR
Sbjct:    5 MKLACLVLA-CMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRG--CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.234e-20
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = 2
Query:   77 CAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            C VL +C+V       AA++CG V  SL  C               CC+G+K+LNS A TTPDRQ  C C+++ A SI  LN +LASGLP +CGV+IPY IS S +C+ ++
Sbjct:   10 CLVLTVCIVASV---DAAISCGTVAGSLAPCATYLSKGGLVPPS--CCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.611e-20
Identity = 49/116 (42.24%), Postives = 71/116 (61.21%), Query Frame = 2
Query:   59 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 406
            M + + C V + CMV  A  A A ++CGQVTS L  C               CC+G++ LN+AA TTPDRQ+ C CLK    +   +NLN A+ LP +CG++I Y+I+P++DCS++
Sbjct:    4 MVMNVLC-VAVACMVFSASYADA-ISCGQVTSGLVPCFGYLAAGGPVPPA--CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.611e-20
Identity = 49/116 (42.24%), Postives = 73/116 (62.93%), Query Frame = 2
Query:   65 LKLACAVLLMCMVMGAPI-AQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            +KLAC ++  CM++  PI + AA++CG V+  +  C+              CCSG+ SLN+ A TTPDRQ  C CL  AA ++  +N+  A+GLP+ CGVNIPY+IS + +C+ V+
Sbjct:    5 MKLAC-LIFACMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.611e-20
Identity = 51/117 (43.59%), Postives = 73/117 (62.39%), Query Frame = 2
Query:   65 LKLACAVLLMCMVMGAPI-AQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI-RNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            +KLAC VL  CM++  PI A  A+TCG V S++  C+              CC+G+  LNS A TTPDRQ  C CL+TAA ++  NLN   A+G+P+ CGV++P+ IS + +C+ V+
Sbjct:    5 MKLACLVLA-CMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGA--CCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.123e-20
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 2
Query:   77 CAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            C +LL+  ++G     +A+TCGQV S L +C+              CC+G+++LN+ A TTPDRQ+ CNCLK+       LN  + +G+P +CGVNIPY I    DC++VR
Sbjct:    8 CFLLLLAFLIGTA---SAITCGQVDSDLTSCLGYARKGGVIPPG--CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.044e-19
Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   65 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            +KLA  V L CM +       A+TC QV+++L  C+              CC+GIK++N  A TTPDRQ+ CNCLK  AGS+  +N   A  LP +CGVN+PY+IS S +C+ V+
Sbjct:    7 IKLALVVAL-CMAVSVA---HAITCSQVSANLAPCINYVRSGGAVPPA--CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.364e-19
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  131 VTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            +TCGQV+SSL  C+              CC+GI+++N+ A TTPDR++ CNCLK  +GSI  +N N A+ LP +CGVNIPY+IS S +C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA--CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 49/116 (42.24%), Postives = 72/116 (62.07%), Query Frame = 2
Query:   59 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 406
            MAL    AV+   +V  A  A AAV+CG VTSS+  C+              CCSG+++LN  A+++ DR++ C+CLK  A S RNLN+  A+ +P +CGV++ + IS SVDCS++
Sbjct:    8 MALVALVAVVAAAVV--AERASAAVSCGDVTSSIAPCLSYVMGRESSPSSS-CCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 49/116 (42.24%), Postives = 72/116 (62.07%), Query Frame = 2
Query:   59 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 406
            MAL    AV+   +V  A  A AAV+CG VTSS+  C+              CCSG+++LN  A+++ DR++ C+CLK  A S RNLN+  A+ +P +CGV++ + IS SVDCS++
Sbjct:    8 MALVALVAVVAAAVV--AERASAAVSCGDVTSSIAPCLSYVMGRESSPSSS-CCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
The following BLAST results are available for this feature:
BLAST of CB290612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP2_BRANA4.240e-2145.69Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP3_ARATH1.234e-2045.05Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP_GERHY1.611e-2042.24Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTPD_BRAOT1.611e-2042.24Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTPA_BRAOT1.611e-2043.59Non-specific lipid-transfer protein A OS=Brassica ... [more]
SCA_LILLO6.123e-2041.44Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP_PYRCO1.044e-1943.48Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUAR1.364e-1948.39Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP3_ORYSJ2.327e-1942.24Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI2.327e-1942.24Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ce08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ce08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290612 ID=CB290612; Name=CB290612; organism=Citrus sinensis; type=EST; length=625bp
GAAAAGTTCCAAGTTAAGCAACATTCTCATTTCTCAGAGCTAATTAAGAA
CATTATACATGGCTCTTAAGCTTGCTTGTGCTGTGCTGCTAATGTGCATG
GTGATGGGTGCGCCCATTGCCCAAGCTGCCGTCACATGTGGCCAAGTGAC
AAGCTCTCTTCAAGCGTGCATGCCATATGTGACGGGCCCCGGTGGAGGCG
CTGTGCCGCCAGCCTGCTGTAGCGGGATTAAGAGTCTTAACTCCGCAGCC
ACCACCACACCCGACCGCCAGAGCGTTTGCAACTGCTTGAAAACCGCTGC
TGGCTCCATCAGAAACCTCAACCTCAACCTCGCTTCTGGCCTCCCACGCC
AGTGTGGCGTCAACATTCCTTACCAAATCAGCCCATCCGTTGACTGCAGC
AGAGTGAGATGAAGATCTTGGAAAAGAGAATATATGCTGAAGTATTATTA
TATATAATATGAATATAAAATGGAATAATAAAGTGGGTGATATGGACTCT
CCTAGGTCAAGAGAGTATTAGTACTATGCATCTATCATATATGTACCAGA
GTGTCATCCACCGAGTCCCTTGCCACGATTCTCATATATAATATACTACT
TTGTTATTTAAAAAAAAAAAAAAAA
back to top