CB290612

Overview
NameCB290612
Unique NameCB290612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13215 contig Csv1_Contig13215:1..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 2
Query:   62 ALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            A +L    L+  M++ A  A AA++CGQV+S+L  C+              CCSG+K L  AA +T D+Q+ C C+K+AAG    LN   A+G+P  CGV++PY IS SVDCS++R
Sbjct:    6 ASQLVLVALVAAMLLVA--ADAAISCGQVSSALSPCISYARGNGAKPPAA-CCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.969e-19
Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = 2
Query:   59 MALKLACAVLLMCMVMGAPIA--QAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            MA   A  ++L+ MV    I    AA++CGQV+S+L  C+              CCSG+K L  AA +T D+Q+ C C+K+AAG    LN   A+G+P  CGV++PY IS SVDCS++R
Sbjct:    1 MARAAATQLVLVAMVAAMLIVATDAAISCGQVSSALSPCISYARGNGAKPPVA-CCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 2
Query:   65 LKLACAVLLMCMVMGAPI-AQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI-RNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            +KLAC VL  CM++  PI A A ++CG V  +L  C+              CC+G+ +L + A+TTPDRQ  C CL++AA ++   LN   A+GLP  C VNIPY+IS S +C+ VR
Sbjct:    5 MKLACMVLA-CMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQG--CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 50/119 (42.02%), Postives = 71/119 (59.66%), Query Frame = 2
Query:   59 MALKLACAVLLMCMVMGAPIA--QAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            MA   A  ++L+ MV    +    AA++CGQV+S+L  C+              CCSG+K L  AA +T D+Q+ C C+K+AAG    LN   A+G+P  CGV++PY IS SVDCS++R
Sbjct:    1 MARAAATQLVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVA-CCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 2
Query:   80 AVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 406
            AV L+ M+   P A  A+ CG V S ++ C+              CC G+K+L++ A +  DRQS CNCLK  A  I NLN + A  +P +CGVN+PY IS ++DCSRV
Sbjct:    7 AVALVLMLAAVPRAAVAIDCGHVDSLVRPCLSYVQGGPGPSGQ--CCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.508e-18
Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   62 ALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 406
            A KLA   L+  M++ A  A AA+TCGQV+S+L  C               CCSG+K L   A +T D+Q+ C CLK+ AG+    N   A+G+P +CGV++PY IS SVDCS++
Sbjct:    6 ATKLALVALVAAMLLVA--ADAAITCGQVSSALGPCAAYAKGSGTSPSAG-CCSGVKRLAGLARSTADKQATCRCLKSVAGAY---NAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.970e-18
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 2
Query:   77 CAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            C VL + +V       AA+TCG V SSL  C+              CC+G+K LN  A TTPDRQ  C CL++AA   + +N +LASGLP +CGV+IPY IS S +C+ ++
Sbjct:   10 CFVLTVFIVASV---DAAITCGTVASSLSPCLGYLSKGGVVPPP--CCAGVKKLNGMAQTTPDRQQACRCLQSAA---KGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.970e-18
Identity = 47/118 (39.83%), Postives = 71/118 (60.17%), Query Frame = 2
Query:   59 MALKLACAVLLMCMVMGAPIA--QAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 406
            MA   A  ++L+ MV    +    AA++CGQV+S+L  C+              CCSG+K L  AA +T D+Q+ C CLK+ A SI+ +N+   SG+P +CGV++P+ IS S DC++V
Sbjct:    1 MARAAATQLVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVA-CCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  131 VTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            +TCGQV+S+L  C+              CC+GI+++N+ A TTPDRQ+ CNCLK  + S+  +N N A+ LP +CGV+IPY+IS S +C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA--CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  131 VTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            +TCGQV+S+L  C+              CC+GI+++N+ A TT DR++ CNCLK  +GSI  +N N A+ LP +CGVN+PY+IS S +C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPA--CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
The following BLAST results are available for this feature:
BLAST of CB290612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLT41_HORVU3.039e-1943.10Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLT42_HORVU3.969e-1942.86Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP2_ARATH6.770e-1943.59Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLT43_HORVU6.770e-1942.02Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLTP1_WHEAT8.841e-1943.12Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP8_HORVU1.508e-1843.48Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP4_ARATH1.970e-1844.14Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP3_HORVU1.970e-1839.83Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP1_PRUPE3.360e-1845.16Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUDO4.388e-1845.16Non-specific lipid-transfer protein 1 OS=Prunus do... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ce08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ce08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290612 ID=CB290612; Name=CB290612; organism=Citrus sinensis; type=EST; length=625bp
GAAAAGTTCCAAGTTAAGCAACATTCTCATTTCTCAGAGCTAATTAAGAA
CATTATACATGGCTCTTAAGCTTGCTTGTGCTGTGCTGCTAATGTGCATG
GTGATGGGTGCGCCCATTGCCCAAGCTGCCGTCACATGTGGCCAAGTGAC
AAGCTCTCTTCAAGCGTGCATGCCATATGTGACGGGCCCCGGTGGAGGCG
CTGTGCCGCCAGCCTGCTGTAGCGGGATTAAGAGTCTTAACTCCGCAGCC
ACCACCACACCCGACCGCCAGAGCGTTTGCAACTGCTTGAAAACCGCTGC
TGGCTCCATCAGAAACCTCAACCTCAACCTCGCTTCTGGCCTCCCACGCC
AGTGTGGCGTCAACATTCCTTACCAAATCAGCCCATCCGTTGACTGCAGC
AGAGTGAGATGAAGATCTTGGAAAAGAGAATATATGCTGAAGTATTATTA
TATATAATATGAATATAAAATGGAATAATAAAGTGGGTGATATGGACTCT
CCTAGGTCAAGAGAGTATTAGTACTATGCATCTATCATATATGTACCAGA
GTGTCATCCACCGAGTCCCTTGCCACGATTCTCATATATAATATACTACT
TTGTTATTTAAAAAAAAAAAAAAAA
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