CB290612

Overview
NameCB290612
Unique NameCB290612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.178e-17
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  131 VTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 406
            +TCGQV  +L  C+              CC+G+K++ +++ TT DR++VC+CLK AAG++R +N N A  LP +CGVNIPY+IS S +C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGGVVPPS--CCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.844e-17
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  128 AVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNC-LKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 406
            A++CGQV+S++  C+              C SG++SLN+AA TT DR++ CNC LK+AA  +  LN   AS +P +CGV +PY IS S+DCSRV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSAS-CQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.844e-17
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 2
Query:   68 KLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 406
            K+   ++++ + M +P  ++ + CG VTS+L  C+              CC G+KSL   A TTPDR+ VC CLK A   I+ LN +L + LP  CGV+IPY IS S +C  +
Sbjct:    6 KIITCLIVLTIYMASP-TESTIQCGTVTSTLAQCLTYLTNSGPLPSQ--CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  131 VTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 406
            ++CG V + L  C+              CC+G+K+L ++A TT DR++ C CL  A+ SI  +N  LA+GLP +CGVNIPY+ISPS +C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVA--CCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  131 VTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 406
            ++CG V + + +C+              CC+G+K+L ++ATTT DR++ C CL +A+ +I  +N  LA+GLP +CGV+IPY+ISPS +C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA--CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.412e-16
Identity = 42/115 (36.52%), Postives = 65/115 (56.52%), Query Frame = 2
Query:   65 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI-RNLNLNLASGLPRQCGVNIPY--QISPSVDCS 400
            +KL C V +  +  G   A+AA++CG+V S+L+ C               CC+G++ LN    TT DR+  C C+K AA ++   LN + A+G+PR+CG+ IPY  QI  +  C+
Sbjct:    5 MKLGCLVFVFVIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  128 AVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            AVTC  VT +L  CM              CC+G++SL +AA T  DR+  CNC+K+AA   ++LN  +A+ L  QCGV + Y +SP+V+C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  128 AVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            AVTC  VT +L  CM              CC+G++SL +AA T  DR+  CNC+K+AA   ++LN  +A+ L  QCGV + Y +SP+V+C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 2
Query:   65 LKLACAVLLMCMVMGAPIA-QAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI-RNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            LKL+  V++ CM++ AP+A +AA++CG VT SL  C               CCSG++ LNS A TT DRQ  C C++ AA ++   LN   A+ LP  C V I Y IS   +C+ VR
Sbjct:    5 LKLSTLVIV-CMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRG--CCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CB290612 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 2
Query:   83 VLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAG--SIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 409
            +L +C+V+     +AAV+C  V + L  C+              CC+G+ +L S A T+ DRQ VC C+K+A G  ++    +  A  LP +CGV++PY+ SPS DC  ++
Sbjct:    5 LLAVCLVLALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTL--CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
The following BLAST results are available for this feature:
BLAST of CB290612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP1_PHAAU2.178e-1743.48Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP_ELECO2.844e-1746.81Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTPC_ARATH2.844e-1738.94Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP5_VITSX8.275e-1743.48Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP3_VITSX1.081e-1641.30Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP7_ARATH1.412e-1636.52Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP_AMACA2.408e-1641.49Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP2.408e-1641.49Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP5_ARATH4.541e-1541.88Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP6_ARATH1.726e-1435.14Non-specific lipid-transfer protein 6 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ce08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ce08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290612 ID=CB290612; Name=CB290612; organism=Citrus sinensis; type=EST; length=625bp
GAAAAGTTCCAAGTTAAGCAACATTCTCATTTCTCAGAGCTAATTAAGAA
CATTATACATGGCTCTTAAGCTTGCTTGTGCTGTGCTGCTAATGTGCATG
GTGATGGGTGCGCCCATTGCCCAAGCTGCCGTCACATGTGGCCAAGTGAC
AAGCTCTCTTCAAGCGTGCATGCCATATGTGACGGGCCCCGGTGGAGGCG
CTGTGCCGCCAGCCTGCTGTAGCGGGATTAAGAGTCTTAACTCCGCAGCC
ACCACCACACCCGACCGCCAGAGCGTTTGCAACTGCTTGAAAACCGCTGC
TGGCTCCATCAGAAACCTCAACCTCAACCTCGCTTCTGGCCTCCCACGCC
AGTGTGGCGTCAACATTCCTTACCAAATCAGCCCATCCGTTGACTGCAGC
AGAGTGAGATGAAGATCTTGGAAAAGAGAATATATGCTGAAGTATTATTA
TATATAATATGAATATAAAATGGAATAATAAAGTGGGTGATATGGACTCT
CCTAGGTCAAGAGAGTATTAGTACTATGCATCTATCATATATGTACCAGA
GTGTCATCCACCGAGTCCCTTGCCACGATTCTCATATATAATATACTACT
TTGTTATTTAAAAAAAAAAAAAAAA
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