CB290624

Overview
NameCB290624
Unique NameCB290624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.853e-61
Identity = 119/207 (57.49%), Postives = 150/207 (72.46%), Query Frame = 1
Query:  220 SGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL 837
            +G KRV      L +ELWHACAGPLV++P  G RV YFPQGH EQV ASTN+  D  +P Y  L  +++C++ NV + A+ +TDEV+AQ+TL P + Q++             R   + FCKTLTASDTSTHGGFSV RR A++  PPLD S+QPP QEL A+DLH NEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+
Sbjct:   16 TGEKRV------LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGVPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 216          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.676e-60
Identity = 111/200 (55.50%), Postives = 148/200 (74.00%), Query Frame = 1
Query:  241 DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL 837
            + +  L +ELWHACAGPLV +P  G RV YFPQGH EQV ASTN+  +  +P Y +LP++++C++ +V + A+ +TDEV+AQ+TL P + Q++N            +   + FCKTLTASDTSTHGGFSV RR A+   PPLD ++QPP QEL A+D+H  EW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+
Sbjct:   23 EEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPPAQELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 222          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.676e-60
Identity = 111/200 (55.50%), Postives = 148/200 (74.00%), Query Frame = 1
Query:  241 DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL 837
            + +  L +ELWHACAGPLV +P  G RV YFPQGH EQV ASTN+  +  +P Y +LP++++C++ +V + A+ +TDEV+AQ+TL P + Q++N            +   + FCKTLTASDTSTHGGFSV RR A+   PPLD ++QPP QEL A+D+H  EW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+
Sbjct:   23 EEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPPAQELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 222          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 4.564e-60
Identity = 111/213 (52.11%), Postives = 149/213 (69.95%), Query Frame = 1
Query:  202 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            N+    SG+  +   +  +Y +LW  CAGPL  +P+ GE+VYYFPQGHIE VEAST +  ++  P+ D PSK+ CRVI +QLK E ++DE +A++TL+P++ Q     + +       R  V+SF K LTASDTS HGGFSV ++HA ECLPPLDMS+  PTQE+ A DLHGN+WRFRHI+RG  +RHLL  GW+ F +SK+LV GD  +F+R
Sbjct:    8 NTQPELSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQVVIPTQNQNQF----RPLVNSFTKVLTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQRHLLTIGWNAFTTSKKLVEGDVIVFVR 214          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 4.564e-60
Identity = 113/197 (57.36%), Postives = 141/197 (71.57%), Query Frame = 1
Query:  253 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            A+ +ELWHACAGPLV++P  G  V YFPQGH EQV AS  +  D  +P Y +LPSK++C +  V L A+PDTDEV+AQ+TL P +   + A++         R  +  FCKTLTASDTSTHGGFSV RR A++  PPLD S QPP QEL A+D+H N W FRHI+RGQP+RHLL +GWS+FVS KRL AGD+ I +R
Sbjct:   40 AINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNLPSKLICLLHGVNLHADPDTDEVYAQMTLQPVNTYGKEALQISELALKQARPQMEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVVR 236          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.734e-59
Identity = 114/201 (56.72%), Postives = 140/201 (69.65%), Query Frame = 1
Query:  265 ELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEK--------EXXXXXXXRFHV-HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            ELWHACAGPL+++P+ G  V YFPQGH+EQ         D    +Y LP  + CR+++V+L AE  TDEV+AQV+LLPES   E  V +        E       R +  H FCKTLTASDTSTHGGFSV RR A++C PPLD S+  P+QEL A+DLHG EWRFRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +FLR
Sbjct:   54 ELWHACAGPLISLPKRGSLVLYFPQGHLEQAP-------DFSAAIYGLPPHVFCRILDVKLHAETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR 247          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 2.265e-59
Identity = 117/226 (51.77%), Postives = 146/226 (64.60%), Query Frame = 1
Query:  163 SCNETGRIPMEGQNSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            S N     P+EG+  N               + +ELWHACAGPL+++P  G  V YFPQGH EQV AS  +  D      +LPSK++C + NV L A+P+TDEV+AQ+TL P +  D +A+          R     FCKTLTASDTSTHGGFSV RR A++  P LD S QPP QEL AKD+H N W FRHI+RGQP+RHLL +GWSVFVS+KRL AGD+ +F+R
Sbjct:    5 SSNGVSPNPVEGERRN---------------INSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIR 215          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.863e-59
Identity = 109/196 (55.61%), Postives = 142/196 (72.45%), Query Frame = 1
Query:  253 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            A+ +ELWHACAGPLV++P  G  V YFPQGH EQV AS ++  D       LPSK++C+++++ L A+ +TDEV+AQ+TL P +  D +A+          +     FCKTLTASDTSTHGGFSV RR A++  PPLD + QPP QEL AKDLH   W+FRHI+RGQP+RHLL +GWSVFVS+KRL+AGD+ +F+R
Sbjct:   20 AINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDNIPGYPSLPSKLICKLLSLTLHADSETDEVYAQMTLQPVNKYDRDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIR 215          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.124e-58
Identity = 108/196 (55.10%), Postives = 141/196 (71.94%), Query Frame = 1
Query:  253 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            A+ +ELWHACAGPLV++P  G  V YFPQGH EQV AS ++  D       LPSK++C+++++ L A+ +TDEV+ Q+TL P +  D +A+          +     FCKTLTASDTSTHGGFSV RR A++  PPLD + QPP QEL AKDLH   W+FRHI+RGQP+RHLL +GWSVFVS+KRL+AGD+ +F+R
Sbjct:   20 AINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDNIPGYPSLPSKLICKLLSLTLHADSETDEVYVQMTLQPVNKYDRDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIR 215          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.124e-58
Identity = 111/209 (53.11%), Postives = 146/209 (69.86%), Query Frame = 1
Query:  217 TSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            T G K+V      + +ELWHACAGPLV +P+ G  VYYFPQGH EQV A+T ++ + ++P Y +LPS++LC+V N+ L A+ DTDEV+AQ+TL P +++ +             +     FCK LTASDTSTHGGFSV RR A++  P LD S QPP QEL  +DLH N W FRHI+RGQP+RHLL +GWS+FV +KRL AGD+ +F+R
Sbjct:   29 TQGAKKV------INSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIR 231          
The following BLAST results are available for this feature:
BLAST of CB290624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ARFF_ARATH1.853e-6157.49Auxin response factor 6 OS=Arabidopsis thaliana GN... [more]
ARFL_ORYSJ2.676e-6055.50Auxin response factor 12 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSI2.676e-6055.50Auxin response factor 12 OS=Oryza sativa subsp. in... [more]
ARFN_ARATH4.564e-6052.11Putative auxin response factor 14 OS=Arabidopsis t... [more]
ARFE_ORYSJ4.564e-6057.36Auxin response factor 5 OS=Oryza sativa subsp. jap... [more]
ARFC_ARATH1.734e-5956.72Auxin response factor 3 OS=Arabidopsis thaliana GN... [more]
ARFG_ARATH2.265e-5951.77Auxin response factor 7 OS=Arabidopsis thaliana GN... [more]
ARFP_ORYSJ3.863e-5955.61Auxin response factor 16 OS=Oryza sativa subsp. ja... [more]
ARFP_ORYSI1.124e-5855.10Auxin response factor 16 OS=Oryza sativa subsp. in... [more]
ARFK_ORYSJ1.124e-5853.11Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cf04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290624 ID=CB290624; Name=CB290624; organism=Citrus sinensis; type=EST; length=840bp
GAGAGGGAGGGAAATTGTCTCTGCGTTTAGAGGTTCGCGTGTTGTCGTTT
TGAGCGTTAGCAGATGAGAGATCTGAGCTTGAAAGGGACTTGAATTGGGA
AAAGAGAAGATAAAGCAAATAAAATGGCAGCAGCTGCTTCTTCTTCAGAG
GTGTCTATGAAGTCTTGTAACGAGACTGGTAGGATTCCTATGGAAGGGCA
GAATAGTAATTCCACAACTTCCGGTGTCAAACGAGTTGGGGACCCCGAAA
TGGCGCTCTACACGGAGCTGTGGCATGCCTGCGCCGGTCCTTTGGTCACC
GTCCCTCGAGAAGGCGAGCGCGTGTACTACTTCCCTCAAGGCCACATAGA
GCAGGTGGAAGCGTCAACTAATCAGGTCGCAGACCAGCAAATGCCAGTTT
ATGATCTTCCTTCAAAGATACTCTGTCGTGTAATTAACGTCCAATTAAAG
GCTGAACCTGATACTGATGAGGTGTTTGCACAAGTGACTTTACTTCCAGA
GTCAAACCAAGATGAGAACGCGGTGGAGAAAGAACCACCTCCACCCCCGC
CACCAAGATTTCACGTGCATTCGTTTTGTAAAACACTAACGGCATCGGAT
ACAAGTACTCATGGTGGGTTTTCGGTGCTGAGACGGCATGCTGATGAGTG
TCTTCCACCCTTGGACATGTCACGGCAGCCTCCCACACAGGAGTTGGCTG
CTAAGGATTTGCATGGAAATGAGTGGCGGTTCCGGCATATTTTCAGGGGT
CAACCACGTAGACACTTGCTTCAGAGTGGATGGAGTGTTTTTGTTAGCTC
AAAAAGACTAGTTGCAGGGGATGCTTTTATATTTCTGAGG
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