CB290624

Overview
NameCB290624
Unique NameCB290624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.124e-58
Identity = 111/209 (53.11%), Postives = 146/209 (69.86%), Query Frame = 1
Query:  217 TSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            T G K+V      + +ELWHACAGPLV +P+ G  VYYFPQGH EQV A+T ++ + ++P Y +LPS++LC+V N+ L A+ DTDEV+AQ+TL P +++ +             +     FCK LTASDTSTHGGFSV RR A++  P LD S QPP QEL  +DLH N W FRHI+RGQP+RHLL +GWS+FV +KRL AGD+ +F+R
Sbjct:   29 TQGAKKV------INSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIR 231          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 1.468e-58
Identity = 110/202 (54.46%), Postives = 143/202 (70.79%), Query Frame = 1
Query:  238 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            G  +  + +ELWHACAGPLV +P+ G  VYYF QGH EQV  ST + A  Q+P Y +LPS+++C+V NV L A+ D+DE++AQ++L P  ++ +     +       +     FCKTLTASDTSTHGGFSV RR A++  PPLD S QPPTQEL  +DLH N W FRHI+RGQP+RHLL +GWS+FV SKRL AGD+ +F+R
Sbjct:   45 GTRKPVINSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVHSERDVFPVPDFGMLRGSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIR 246          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.917e-58
Identity = 112/196 (57.14%), Postives = 141/196 (71.94%), Query Frame = 1
Query:  265 ELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQ---DENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            ELW+ACAGPLV++P +G  + YFPQGH EQV AS  + AD Q+P Y +LPSK++C + +V + A+PDTDEV+A++TL P SN    D+  +          R     FCKTLTASDTSTHGGFSV RR A+   P LD S QPP QEL A+DLH N W FRHI+RGQP+RHLL +GWS+FVS KRL+AGD+ +F+R
Sbjct:   25 ELWYACAGPLVSLPPQGSLIVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHSVTMLADPDTDEVYARMTLQPVSNVTQCDKETLLASELALKQTRPQTEFFCKTLTASDTSTHGGFSVPRRAAERIFPRLDFSMQPPAQELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIR 220          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFL_ARATH (Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 3.271e-58
Identity = 109/213 (51.17%), Postives = 146/213 (68.54%), Query Frame = 1
Query:  202 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            N+    SG+  +   +  +Y +LW  CAGPL  +P+ GE+VYYFPQGHIE VE ST +  ++  P+ DLPSK+ CRVI + LK E ++DE +A++TL+P++ Q     + E       R  V+SF K LTASDTS HGGF V ++HA ECLP LDMS+  P QEL A DLHGN+WRF H +RG P+RHLL +GW+ F +SK+LVAGD  +F+R
Sbjct:    8 NAQPELSGI--IDGSKSYVYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSKLQCRVIAIHLKVENNSDETYAEITLMPDTTQVVIPTQNENQF----RPLVNSFTKVLTASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVR 214          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFV_ARATH (Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.243e-57
Identity = 110/213 (51.64%), Postives = 149/213 (69.95%), Query Frame = 1
Query:  202 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            N+    SG+  +   +  +Y +LW  CAGPL  +P+ GE++YYFPQG+IE VEAST +  ++  P+ DLPSK+ CRVI +QLK E ++DE +A++TL+P++ Q     + E       R  V+SF K LTASDTS  GGF V ++HA ECLPPLDMS+  PTQEL A DLHGN+WRF H +RG P+RHLL +GW+ F +SK+LVAGD  +F+R
Sbjct:    8 NAQPELSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQVVIPTQNENQF----RPLVNSFTKVLTASDTS--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVR 212          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.120e-57
Identity = 109/193 (56.48%), Postives = 135/193 (69.95%), Query Frame = 1
Query:  262 TELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            ++LWHACAGPLV++P  G  V YFPQGH EQV AS  +  D      +LPSK++C + +V L A+ +TDEV+AQ+TL P +  D  A+          R     FCKTLTASDTSTHGGFSV RR A++  PPLD S QPP QE+ AKDLH   W FRHI+RGQP+RHLL +GWSVFVS+KRL AGD+ +F+R
Sbjct:   22 SQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVR 214          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 4.723e-57
Identity = 106/213 (49.77%), Postives = 148/213 (69.48%), Query Frame = 1
Query:  202 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            N+    SG+  +   +  +Y +LW  CAGPL  +P+ GE VYYFPQG+IE V+AST +  ++  P+ DLPSK+ CRVI + LK E ++DE++A++TL+P++ Q     + E       R  V+SF K LTASDTS +GGFSV ++HA ECLPPLDMS+  P QE+ A DLH N+WRFRH +RG P+RH L +GW+ F++SK+LV GD  +F+R
Sbjct:    8 NAQPKLSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVIAIHLKVENNSDEIYAEITLMPDTTQVVIPTQSENRF----RPLVNSFTKVLTASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYRGTPQRHSLTTGWNEFITSKKLVKGDVIVFVR 214          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFO_ARATH (Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 3.061e-56
Identity = 110/223 (49.33%), Postives = 150/223 (67.26%), Query Frame = 1
Query:  172 ETGRIPMEGQNSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            ETG +     N+    SG+  +   +  +Y +LW  CAGPL  +P+ GE+VYYFPQG+IE VEAST +  ++  P+ DLPSK+ CRVI + LK E ++DE +A++TL+P++ Q     + E       R  V+SF K LTASD S +G FSV ++HA ECLPPLDMS+  P QEL A DLHGN+W FRH +RG P+RHLL +GW+ F +SK+LV GD  +F+R
Sbjct:    2 ETGNVV----NAQPELSGI--IDRSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREELNELQPICDLPSKLQCRVIAIHLKVENNSDETYAKITLMPDTTQVVIPTQNENQF----RPLVNSFTKVLTASDISANGVFSVPKKHAIECLPPLDMSQPLPAQELLAIDLHGNQWSFRHSYRGTPQRHLLTTGWNEFTTSKKLVKGDVIVFVR 214          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFO_ORYSJ (Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.385e-55
Identity = 114/235 (48.51%), Postives = 147/235 (62.55%), Query Frame = 1
Query:  151 VSMKSCNETGRIPMEGQNSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAV---EKEXXXXXXXRFH--VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            + + +  E      E   +N ++    R G    A+  ELWHACAGP+  +PR+G  V Y PQGH+E +  +    A        +P  + CRV++V L A+  TDEV+AQ++L+PE  +        E E       RF    H FCKTLTASDTSTHGGFSV RR A++C PPLD S+Q P+QEL AKDLH  EWRFRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +FLR
Sbjct:    4 IDLNTVEEDEEEAAEEVAANGSSPAPARAG----AVCLELWHACAGPVAPLPRKGGVVVYLPQGHLEHLGDAPAAAAAAAA----VPPHVFCRVVDVTLLADAATDEVYAQLSLVPEKEEVARRADDGEGEDGDGMKQRFARMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHSTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR 230          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFT_ARATH (Auxin response factor 20 OS=Arabidopsis thaliana GN=ARF20 PE=2 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 5.773e-55
Identity = 108/223 (48.43%), Postives = 148/223 (66.37%), Query Frame = 1
Query:  172 ETGRIPMEGQNSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            ETG +     N+    SG+  +   +  +Y +LW  CAGPL  +P+ GE VYYFPQG+IE V+AST +  ++  P+ DLPSK+ CRVI + LK E ++DE +A++TL+P++ Q     + E       R  V+SF K LTASDTS +GGF V ++HA ECLPPL +    P QEL AKDLHGN+WRFRH +RG P+RH L +GW+ F +SK+LV GD  +F+R
Sbjct:    2 ETGNVV----NAQPELSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPSKLQCRVIAIHLKVENNSDETYAEITLMPDTTQVVIPTQSE----NQFRPLVNSFTKVLTASDTSAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFVR 210          
The following BLAST results are available for this feature:
BLAST of CB290624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ARFK_ORYSI1.124e-5853.11Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
ARFE_ARATH1.468e-5854.46Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
ARFU_ORYSJ1.917e-5857.14Auxin response factor 21 OS=Oryza sativa subsp. ja... [more]
ARFL_ARATH3.271e-5851.17Auxin response factor 12 OS=Arabidopsis thaliana G... [more]
ARFV_ARATH1.243e-5751.64Auxin response factor 22 OS=Arabidopsis thaliana G... [more]
ARFS_ARATH2.120e-5756.48Auxin response factor 19 OS=Arabidopsis thaliana G... [more]
ARFU_ARATH4.723e-5749.77Putative auxin response factor 21 OS=Arabidopsis t... [more]
ARFO_ARATH3.061e-5649.33Putative auxin response factor 15 OS=Arabidopsis t... [more]
ARFO_ORYSJ3.385e-5548.51Auxin response factor 15 OS=Oryza sativa subsp. ja... [more]
ARFT_ARATH5.773e-5548.43Auxin response factor 20 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cf04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290624 ID=CB290624; Name=CB290624; organism=Citrus sinensis; type=EST; length=840bp
GAGAGGGAGGGAAATTGTCTCTGCGTTTAGAGGTTCGCGTGTTGTCGTTT
TGAGCGTTAGCAGATGAGAGATCTGAGCTTGAAAGGGACTTGAATTGGGA
AAAGAGAAGATAAAGCAAATAAAATGGCAGCAGCTGCTTCTTCTTCAGAG
GTGTCTATGAAGTCTTGTAACGAGACTGGTAGGATTCCTATGGAAGGGCA
GAATAGTAATTCCACAACTTCCGGTGTCAAACGAGTTGGGGACCCCGAAA
TGGCGCTCTACACGGAGCTGTGGCATGCCTGCGCCGGTCCTTTGGTCACC
GTCCCTCGAGAAGGCGAGCGCGTGTACTACTTCCCTCAAGGCCACATAGA
GCAGGTGGAAGCGTCAACTAATCAGGTCGCAGACCAGCAAATGCCAGTTT
ATGATCTTCCTTCAAAGATACTCTGTCGTGTAATTAACGTCCAATTAAAG
GCTGAACCTGATACTGATGAGGTGTTTGCACAAGTGACTTTACTTCCAGA
GTCAAACCAAGATGAGAACGCGGTGGAGAAAGAACCACCTCCACCCCCGC
CACCAAGATTTCACGTGCATTCGTTTTGTAAAACACTAACGGCATCGGAT
ACAAGTACTCATGGTGGGTTTTCGGTGCTGAGACGGCATGCTGATGAGTG
TCTTCCACCCTTGGACATGTCACGGCAGCCTCCCACACAGGAGTTGGCTG
CTAAGGATTTGCATGGAAATGAGTGGCGGTTCCGGCATATTTTCAGGGGT
CAACCACGTAGACACTTGCTTCAGAGTGGATGGAGTGTTTTTGTTAGCTC
AAAAAGACTAGTTGCAGGGGATGCTTTTATATTTCTGAGG
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