CB290624

Overview
NameCB290624
Unique NameCB290624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.560e-42
Identity = 88/205 (42.93%), Postives = 126/205 (61.46%), Query Frame = 1
Query:  238 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQD----ENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            G  E  L  +LWHACAG +V +P    +V+YFPQGH E    + + V    +P+   P  +LCRV+ ++  A+ ++DEVFA++ L+P  + +    E    ++            SF KTLT SD +  GGFSV R  A+   P LD + +PP Q + AKD+HG+ W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +F+R
Sbjct:   10 GGTEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAEN---AYDCVDFGNLPI---PPMVLCRVLAIKYMADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFMR 208          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.130e-41
Identity = 94/216 (43.52%), Postives = 122/216 (56.48%), Query Frame = 1
Query:  226 VKRVGDPE--MALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQ-QMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVH--------SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            +K VG+ E    L  +LWHACAG +V +P    RVYYF QGH E  +      A   ++    LP  +LCRV  VQ  A+ D+DEV+A++ L P +  +    E +                    SF KTLT SD +  GGFSV R  A+   P LD    PP Q + AKD+HG  W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR
Sbjct:    1 MKEVGEVEEVRCLDPQLWHACAGGMVQMPAPRSRVYYFAQGHAEHADGGGGAAAAAAELGPRALPPLVLCRVEGVQFLADRDSDEVYAKIRLAPVAPGEAEFREPDELCPLGAAGDAAEPSPEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYRADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR 216          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.694e-36
Identity = 83/195 (42.56%), Postives = 107/195 (54.87%), Query Frame = 1
Query:  268 LWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFH----VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            +W ACAG  V +P    RVYYFPQGH+E      + +     PV        C + ++QL A+P TDEVFA + L P + Q                      V +F K LT SD +  GGFSV R  AD   P L+    PP Q+L   D+HG  W FRHI+RG PRRHLL +GWS FV+SK+L+AGD+ +F+R
Sbjct:   20 IWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSSTSPVP-------CIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMR 207          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFM_ORYSJ (Auxin response factor 13 OS=Oryza sativa subsp. japonica GN=ARF13 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.026e-32
Identity = 83/202 (41.09%), Postives = 107/202 (52.97%), Query Frame = 1
Query:  268 LWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYD-LPSK---ILCRVINVQLKAEPDTDEVFAQVTLLPESNQDEN--------AVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL 837
            +W ACA PL  +P  G +V YFP+GH EQ  A          P+ D LPS     LC +  V L A+  T E +A ++LLP  +            A E         R+    + K LT SD +  GGFSV R  AD   P L++   PP Q L   DL G+ W FRHI+RG PRRHLL +GWS FV++K+LVAGD  +F+
Sbjct:   28 VWLACAAPLSRIPVVGTQVSYFPEGHAEQCPA----------PLPDPLPSAHRFFLCTITAVDLSADTTTGEPYATISLLPLRHDAPAPAPAPAPAAAELAEAESQEFRY----YAKQLTQSDANNGGGFSVPRLCADHIFPALNLDDDPPVQSLTMGDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFM 215          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFT_ORYSJ (Putative auxin response factor 20 OS=Oryza sativa subsp. japonica GN=ARF20 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.371e-18
Identity = 64/208 (30.77%), Postives = 102/208 (49.04%), Query Frame = 1
Query:  244 PEMALYTELWHACAGPLVTV-PREGERVYYFPQGHIEQ-VEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLL-------QSGWSVFVSSKRLVAGDAFIFLR 840
            P + +  ++WHACA P   V P  G  VYY P GHIEQ  E     ++    P++ +P    C V ++ L  + ++ E +A ++LLP S+ D  A  ++        F    F K L+ +D +++    VL   A+  LPPLD++     +    +DL G  + F HI+  +  R++L         GW  FV +KRL   D  +F+R
Sbjct:   15 PPVVIDRDVWHACAVPYSGVLPGVGTLVYYIPHGHIEQCAEDPALLLSRLPDPIHPVP----CTVADLVLDVDAESGEAYATISLLPGSHDDTTA-RRQVPAHGEPGFRF--FEKQLSPADVTSNA--LVLPAGAEHVLPPLDIAAYQTARLFDVRDLRGKRFEFVHIWDKKRCRYMLGDLGVNDNDGWRGFVKAKRLATRDTVVFMR 213          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: Y7838_ORYSJ (B3 domain-containing protein Os07g0183866/Os07g0183932 OS=Oryza sativa subsp. japonica GN=Os07g0183866/Os07g0183932 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.944e-14
Identity = 63/214 (29.44%), Postives = 96/214 (44.86%), Query Frame = 1
Query:  214 TTSGVKRVGDPEMALYTELWHACAGPLV-TVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKI-LCRVINVQLKAEPDTDEVFAQVTLLPESNQD---ENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            TTS   +       +  ++W ACA P    +P  G  VYYFP GH EQ             P   LP +I LC+V +V+L A   T+E  A ++L+P +  D   +     +          + SF K LT +D + +         A   LP + ++   P   L  KDL G EW F + ++   R  + ++GW  F ++  LV GD  +F+R
Sbjct:  222 TTSSSAQFQTQAQQVTRDMWMACAAPKSGRLPTVGSLVYYFPDGHAEQC---------LSRPQEPLPGRIFLCKVTDVRLGAAA-TNEALATISLVPIAADDHAFQLQAPADPDPAPAQSQSLVSFVKPLTYTDVTKNRFMVPKDDAAAGVLPHIQLNDDVP---LRIKDLSGKEWAFNYTWKAHTR--MFRNGWMEFSNANGLVTGDNAVFMR 420          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: Y7833_ORYSJ (B3 domain-containing protein Os07g0183300/Os07g0183600 OS=Oryza sativa subsp. japonica GN=Os07g0183300/Os07g0183600 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.000e-11
Identity = 59/195 (30.26%), Postives = 84/195 (43.08%), Query Frame = 1
Query:  268 LWHACAGPLV-TVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAV---EKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            +W ACA P    +P  G  V+YF  GH EQ       + +Q       P   LC V  V+L+A+  T+E +A +TL P ++ D   +             +  +  F KTL +SD      F+V    A +  PPL  ++    Q L  KDL G+   F +   G   R  L   W  F      V GD+ IF+R
Sbjct:   20 MWLACAAPNSGRLPAVGSMVFYFVDGHAEQFCQFPAPLLEQL--AVPGPRVFLCTVAAVRLRADALTNEAYADITLDPVADHDVPRLLPAPAPAAAAGGQQQQLRYFVKTLMSSDAEYRDRFAVPMDVAKDVFPPLVDAK--AVQPLIVKDLQGSPMTFDYGRNG--NRVTLAKVWKKFRDDMDFVDGDSVIFMR 208          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: Y7832_ORYSJ (B3 domain-containing protein Os07g0183200 OS=Oryza sativa subsp. japonica GN=Os07g0183200 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.117e-11
Identity = 59/196 (30.10%), Postives = 84/196 (42.86%), Query Frame = 1
Query:  265 ELWHACAGPLV-TVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRF---HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            ++W ACA P    +P  G  V+YF  GH  Q       + +Q       P   LC V  V+L+A+  T+E +A++TL P ++ D   +                +  F KTL  SD      FS     A    PPL  ++    Q L  KDLHG+   F +  +G  +R  L   W  F      V GD+ IF+R
Sbjct:   19 DMWLACAAPNSGRLPAVGSVVFYFVDGHAAQFCQFPAPLLEQL--AVPGPRVFLCTVAAVRLRADALTNEAYAEITLDPVADHDVPRLAPAPAPAPAAAAGGQQLRYFVKTLMISDFDFRIRFSAPMADAKGVFPPLVDAK--AVQPLLVKDLHGSPMTFDYGRKG--KRVTLAKVWKKFRDDMDFVDGDSVIFMR 208          
The following BLAST results are available for this feature:
BLAST of CB290624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ARFP_ARATH9.560e-4242.93Auxin response factor 16 OS=Arabidopsis thaliana G... [more]
ARFV_ORYSJ2.130e-4143.52Auxin response factor 22 OS=Oryza sativa subsp. ja... [more]
ARFQ_ARATH2.694e-3642.56Auxin response factor 17 OS=Arabidopsis thaliana G... [more]
ARFM_ORYSJ4.026e-3241.09Auxin response factor 13 OS=Oryza sativa subsp. ja... [more]
ARFT_ORYSJ7.371e-1830.77Putative auxin response factor 20 OS=Oryza sativa ... [more]
Y7838_ORYSJ4.944e-1429.44B3 domain-containing protein Os07g0183866/Os07g018... [more]
Y7833_ORYSJ3.000e-1130.26B3 domain-containing protein Os07g0183300/Os07g018... [more]
Y7832_ORYSJ5.117e-1130.10B3 domain-containing protein Os07g0183200 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cf04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290624 ID=CB290624; Name=CB290624; organism=Citrus sinensis; type=EST; length=840bp
GAGAGGGAGGGAAATTGTCTCTGCGTTTAGAGGTTCGCGTGTTGTCGTTT
TGAGCGTTAGCAGATGAGAGATCTGAGCTTGAAAGGGACTTGAATTGGGA
AAAGAGAAGATAAAGCAAATAAAATGGCAGCAGCTGCTTCTTCTTCAGAG
GTGTCTATGAAGTCTTGTAACGAGACTGGTAGGATTCCTATGGAAGGGCA
GAATAGTAATTCCACAACTTCCGGTGTCAAACGAGTTGGGGACCCCGAAA
TGGCGCTCTACACGGAGCTGTGGCATGCCTGCGCCGGTCCTTTGGTCACC
GTCCCTCGAGAAGGCGAGCGCGTGTACTACTTCCCTCAAGGCCACATAGA
GCAGGTGGAAGCGTCAACTAATCAGGTCGCAGACCAGCAAATGCCAGTTT
ATGATCTTCCTTCAAAGATACTCTGTCGTGTAATTAACGTCCAATTAAAG
GCTGAACCTGATACTGATGAGGTGTTTGCACAAGTGACTTTACTTCCAGA
GTCAAACCAAGATGAGAACGCGGTGGAGAAAGAACCACCTCCACCCCCGC
CACCAAGATTTCACGTGCATTCGTTTTGTAAAACACTAACGGCATCGGAT
ACAAGTACTCATGGTGGGTTTTCGGTGCTGAGACGGCATGCTGATGAGTG
TCTTCCACCCTTGGACATGTCACGGCAGCCTCCCACACAGGAGTTGGCTG
CTAAGGATTTGCATGGAAATGAGTGGCGGTTCCGGCATATTTTCAGGGGT
CAACCACGTAGACACTTGCTTCAGAGTGGATGGAGTGTTTTTGTTAGCTC
AAAAAGACTAGTTGCAGGGGATGCTTTTATATTTCTGAGG
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