CB290624
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 9.560e-42 Identity = 88/205 (42.93%), Postives = 126/205 (61.46%), Query Frame = 1 Query: 238 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQD----ENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840 G E L +LWHACAG +V +P +V+YFPQGH E + + V +P+ P +LCRV+ ++ A+ ++DEVFA++ L+P + + E ++ SF KTLT SD + GGFSV R A+ P LD + +PP Q + AKD+HG+ W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +F+R Sbjct: 10 GGTEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAEN---AYDCVDFGNLPI---PPMVLCRVLAIKYMADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFMR 208
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 2.130e-41 Identity = 94/216 (43.52%), Postives = 122/216 (56.48%), Query Frame = 1 Query: 226 VKRVGDPE--MALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQ-QMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVH--------SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840 +K VG+ E L +LWHACAG +V +P RVYYF QGH E + A ++ LP +LCRV VQ A+ D+DEV+A++ L P + + E + SF KTLT SD + GGFSV R A+ P LD PP Q + AKD+HG W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR Sbjct: 1 MKEVGEVEEVRCLDPQLWHACAGGMVQMPAPRSRVYYFAQGHAEHADGGGGAAAAAAELGPRALPPLVLCRVEGVQFLADRDSDEVYAKIRLAPVAPGEAEFREPDELCPLGAAGDAAEPSPEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYRADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR 216
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.694e-36 Identity = 83/195 (42.56%), Postives = 107/195 (54.87%), Query Frame = 1 Query: 268 LWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFH----VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840 +W ACAG V +P RVYYFPQGH+E + + PV C + ++QL A+P TDEVFA + L P + Q V +F K LT SD + GGFSV R AD P L+ PP Q+L D+HG W FRHI+RG PRRHLL +GWS FV+SK+L+AGD+ +F+R Sbjct: 20 IWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSSTSPVP-------CIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMR 207
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFM_ORYSJ (Auxin response factor 13 OS=Oryza sativa subsp. japonica GN=ARF13 PE=2 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 4.026e-32 Identity = 83/202 (41.09%), Postives = 107/202 (52.97%), Query Frame = 1 Query: 268 LWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYD-LPSK---ILCRVINVQLKAEPDTDEVFAQVTLLPESNQDEN--------AVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL 837 +W ACA PL +P G +V YFP+GH EQ A P+ D LPS LC + V L A+ T E +A ++LLP + A E R+ + K LT SD + GGFSV R AD P L++ PP Q L DL G+ W FRHI+RG PRRHLL +GWS FV++K+LVAGD +F+ Sbjct: 28 VWLACAAPLSRIPVVGTQVSYFPEGHAEQCPA----------PLPDPLPSAHRFFLCTITAVDLSADTTTGEPYATISLLPLRHDAPAPAPAPAPAAAELAEAESQEFRY----YAKQLTQSDANNGGGFSVPRLCADHIFPALNLDDDPPVQSLTMGDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFM 215
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFT_ORYSJ (Putative auxin response factor 20 OS=Oryza sativa subsp. japonica GN=ARF20 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.371e-18 Identity = 64/208 (30.77%), Postives = 102/208 (49.04%), Query Frame = 1 Query: 244 PEMALYTELWHACAGPLVTV-PREGERVYYFPQGHIEQ-VEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLL-------QSGWSVFVSSKRLVAGDAFIFLR 840 P + + ++WHACA P V P G VYY P GHIEQ E ++ P++ +P C V ++ L + ++ E +A ++LLP S+ D A ++ F F K L+ +D +++ VL A+ LPPLD++ + +DL G + F HI+ + R++L GW FV +KRL D +F+R Sbjct: 15 PPVVIDRDVWHACAVPYSGVLPGVGTLVYYIPHGHIEQCAEDPALLLSRLPDPIHPVP----CTVADLVLDVDAESGEAYATISLLPGSHDDTTA-RRQVPAHGEPGFRF--FEKQLSPADVTSNA--LVLPAGAEHVLPPLDIAAYQTARLFDVRDLRGKRFEFVHIWDKKRCRYMLGDLGVNDNDGWRGFVKAKRLATRDTVVFMR 213
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: Y7838_ORYSJ (B3 domain-containing protein Os07g0183866/Os07g0183932 OS=Oryza sativa subsp. japonica GN=Os07g0183866/Os07g0183932 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.944e-14 Identity = 63/214 (29.44%), Postives = 96/214 (44.86%), Query Frame = 1 Query: 214 TTSGVKRVGDPEMALYTELWHACAGPLV-TVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKI-LCRVINVQLKAEPDTDEVFAQVTLLPESNQD---ENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840 TTS + + ++W ACA P +P G VYYFP GH EQ P LP +I LC+V +V+L A T+E A ++L+P + D + + + SF K LT +D + + A LP + ++ P L KDL G EW F + ++ R + ++GW F ++ LV GD +F+R Sbjct: 222 TTSSSAQFQTQAQQVTRDMWMACAAPKSGRLPTVGSLVYYFPDGHAEQC---------LSRPQEPLPGRIFLCKVTDVRLGAAA-TNEALATISLVPIAADDHAFQLQAPADPDPAPAQSQSLVSFVKPLTYTDVTKNRFMVPKDDAAAGVLPHIQLNDDVP---LRIKDLSGKEWAFNYTWKAHTR--MFRNGWMEFSNANGLVTGDNAVFMR 420
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: Y7833_ORYSJ (B3 domain-containing protein Os07g0183300/Os07g0183600 OS=Oryza sativa subsp. japonica GN=Os07g0183300/Os07g0183600 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.000e-11 Identity = 59/195 (30.26%), Postives = 84/195 (43.08%), Query Frame = 1 Query: 268 LWHACAGPLV-TVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAV---EKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840 +W ACA P +P G V+YF GH EQ + +Q P LC V V+L+A+ T+E +A +TL P ++ D + + + F KTL +SD F+V A + PPL ++ Q L KDL G+ F + G R L W F V GD+ IF+R Sbjct: 20 MWLACAAPNSGRLPAVGSMVFYFVDGHAEQFCQFPAPLLEQL--AVPGPRVFLCTVAAVRLRADALTNEAYADITLDPVADHDVPRLLPAPAPAAAAGGQQQQLRYFVKTLMSSDAEYRDRFAVPMDVAKDVFPPLVDAK--AVQPLIVKDLQGSPMTFDYGRNG--NRVTLAKVWKKFRDDMDFVDGDSVIFMR 208
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: Y7832_ORYSJ (B3 domain-containing protein Os07g0183200 OS=Oryza sativa subsp. japonica GN=Os07g0183200 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.117e-11 Identity = 59/196 (30.10%), Postives = 84/196 (42.86%), Query Frame = 1 Query: 265 ELWHACAGPLV-TVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRF---HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840 ++W ACA P +P G V+YF GH Q + +Q P LC V V+L+A+ T+E +A++TL P ++ D + + F KTL SD FS A PPL ++ Q L KDLHG+ F + +G +R L W F V GD+ IF+R Sbjct: 19 DMWLACAAPNSGRLPAVGSVVFYFVDGHAAQFCQFPAPLLEQL--AVPGPRVFLCTVAAVRLRADALTNEAYAEITLDPVADHDVPRLAPAPAPAPAAAAGGQQLRYFVKTLMISDFDFRIRFSAPMADAKGVFPPLVDAK--AVQPLLVKDLHGSPMTFDYGRKG--KRVTLAKVWKKFRDDMDFVDGDSVIFMR 208 The following BLAST results are available for this feature:
BLAST of CB290624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290624 ID=CB290624; Name=CB290624; organism=Citrus sinensis; type=EST; length=840bpback to top |