CB290625

Overview
NameCB290625
Unique NameCB290625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:783..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.481e-18
Identity = 53/141 (37.59%), Postives = 75/141 (53.19%), Query Frame = -2
Query:  326 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVWM--QTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVSF 736
            GG++ E  YPY   D  SC+FD + IGA  +    +   E+ +   +   GP++V I++     Q Y  GV     C   +LDHGVL VGYG+          K YW++KNSWG +WG+ GY K+   R N CG+ S  S+
Sbjct:  186 GGIDTESSYPYEAEDR-SCRFDANSIGAICTGSVEVQHTEEALQEAVSGVGPISVAIDASHFSFQFYSSGVYYEQNCSPTFLDHGVLAVGYGTEST-------KDYWLVKNSWGSSWGDAGYIKMSRNRDNNCGIASEPSY 318          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.481e-18
Identity = 52/141 (36.88%), Postives = 74/141 (52.48%), Query Frame = -2
Query:  326 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVW--MQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVSF 736
            GG+E E  YPY G DG  C+++     A ++ F  +   ED + A +   GP+  GI++     + Y GG+     C    + HGVL+VGYG  G   I   G  YW+IKNSWG+ WG  GY K+   + N CG+ S   +
Sbjct:  195 GGLESEATYPYEGKDG-PCRYNPKNSKAEITGFVSLPQSEDILMAAVATIGPITAGIDASHESFKNYKGGIYHEPNCSSDTVTHGVLVVGYGFKG---IETDGNHYWLIKNSWGKRWGIRGYMKLAKDKNNHCGIASYAHY 331          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.481e-18
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = -2
Query:  323 EKDYPYTGTDGGSCKFDKSKIGAAVSNFRVIS--SDEDQMGANLVKHGPLAVGINSVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSFV 721
            +  YP+   +G    F +S+ G +V +F   +    ED+M   L+  GPL V ++++  Q Y+GG+   +      +H VLI G+  +G         PYW+++NSWG +WG  GY  + MG NVCG+   V+ V
Sbjct:  183 DSQYPFKAVNGQCRHFPQSQAGVSVKDFSAYNFRGQEDEMARALLSFGPLVVIVDAMSWQDYLGGIIQHHCSSGEANHAVLITGFDRTG-------NTPYWMVRNSWGSSWGVEGYAHVKMGGNVCGIADSVAAV 310          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.938e-18
Identity = 56/170 (32.94%), Postives = 79/170 (46.47%), Query Frame = -2
Query:  326 GVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVW--MQTYIGGVSCPYICG-KYLDHGVLIVGYGSSG------------------------------FAPIRFKGKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVSF 733
            G++ E  YPYT   G +C F+KS IGA +  +  I++  +    N  +HGP++V I++     Q Y  G+     C    LDHGVL+VGYG  G                                 +R K   YWI+KNSWG +WG  GY  +   R N CG+ S+ S+
Sbjct:  204 GIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSY 373          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.938e-18
Identity = 55/141 (39.01%), Postives = 72/141 (51.06%), Query Frame = -2
Query:  326 GVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVIS-SDEDQMGANLVKHGPLAVGIN-SVWMQTYIGGVSCPYICGKYLD---HGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSF 733
            G+  E  YPY G DG  CK+  SK  A V +   I+ +DE+ M   +  H P++     +     Y  G+     C K  D   H VL VGYG         KG PYWI+KNSWG NWG  GY+ I  G+N+CG+ +  SF
Sbjct:  198 GIMGEDTYPYRGQDG-DCKYQPSKAIAFVKDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEE-------KGIPYWIVKNSWGPNWGMKGYFLIERGKNMCGLAACASF 330          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.755e-18
Identity = 54/145 (37.24%), Postives = 76/145 (52.41%), Query Frame = -2
Query:  326 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNV------CGVDSMVSF 736
            GG++ E+DYPYT  DG      +S+   ++  F  +  +++      V H P++V I++     Q Y  GV     CG  LDHGV+ VGYG+         G  YW ++NSWG +WGENGY  I M RNV      CG+  M S+
Sbjct:  236 GGLDTEEDYPYTAMDGKCNLAKRSRKVVSIDGFEDVPENDELSLQKAVAHQPVSVAIDAGGREFQLYDSGVFTGR-CGTNLDHGVVAVGYGTDAAT-----GAAYWTVRNSWGPDWGENGY--IRMERNVTARTGKCGIAMMASY 372          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.013e-17
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = -2
Query:  344 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNV------CGV 736
            GG++ +KDYPY G DG   +  K+     + ++  + +  ++     V H P+++ I +     Q Y  G+     CG  LDHGV+ VGYG+         GK YWI++NSWG++WGE+GY +  M RN+      CG+
Sbjct:  216 GGIDTDKDYPYKGVDGTCDQIRKNAKVVTIDSYEDVPTYSEESLKKAVAHQPISIAIEAGGRAFQLYDSGIF-DGSCGTQLDHGVVAVGYGTEN-------GKDYWIVRNSWGKSWGESGYLR--MARNIASSSGKCGI 344          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.013e-17
Identity = 53/141 (37.59%), Postives = 76/141 (53.90%), Query Frame = -2
Query:  326 GVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKH-GPLAVGINSVW--MQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVSF 733
            G++ E  YPY   DG SC+FD + + A  S    I+S  +      V+  GP++V I++     Q Y  GV     C   YLDH VL VGYGS G       G+ +W++KNSW  +WG+ GY K+   R N CG+ ++ S+
Sbjct:  188 GIDTEAAYPYEARDG-SCRFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGVYYEPSCSPSYLDHAVLAVGYGSEG-------GQDFWLVKNSWATSWGDAGYIKMSRNRNNNCGIATVASY 320          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.013e-17
Identity = 53/140 (37.86%), Postives = 73/140 (52.14%), Query Frame = -2
Query:  326 GVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVW--MQTYIGGVSCPYICGKYL-DHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVSF 733
            G+E E  YPY G DG  C++      A ++ F  +  +E  +   +   GP++  I++     + Y GGV     C  Y+ +H VL+VGYG  G       G  YW+IKNSWGE WG NG+ KI   R N CG+ S  SF
Sbjct:  195 GLEAEATYPYEGKDG-PCRYHSENASANITGFVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYSGGVYHEPNCSSYVVNHAVLVVGYGFEGNET---DGNNYWLIKNSWGEEWGINGFMKIAKDRNNHCGIASQASF 330          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.728e-17
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = -2
Query:  326 GVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVW--MQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVSF 733
            G+E E  YPY G DG  C++      A ++++  +  +E  +   +   GP++  I++     + Y GG+     C  Y ++H VL+VGYGS G       G  YW+IKNSWGE WG NGY +I     N CG+ S+ S+
Sbjct:  195 GLEAEATYPYEGKDG-PCRYRSENASANITDYVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSSYFVNHAVLVVGYGSEGDVK---DGNNYWLIKNSWGEEWGMNGYMQIAKDHNNHCGIASLASY 330          
The following BLAST results are available for this feature:
BLAST of CB290625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CYSP3_HOMAM3.481e-1837.59Digestive cysteine proteinase 3 OS=Homarus america... [more]
CATR_MOUSE3.481e-1836.88Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CATO_MOUSE3.481e-1833.33Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]
CYSP2_DICDI5.938e-1832.94Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]
CATH_BOVIN5.938e-1839.01Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CYSP1_ORYSJ7.755e-1837.24Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.013e-1734.53Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSP2_HOMAM1.013e-1737.59Digestive cysteine proteinase 2 OS=Homarus america... [more]
CATJ_RAT1.013e-1737.86Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CATJ_MOUSE1.728e-1735.71Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cf05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290625 ID=CB290625; Name=CB290625; organism=Citrus sinensis; type=EST; length=737bp
TTTTATTTTTTTTTTTTTTTAAAATATAACATTATAATATTTCTACAAGC
CTGCCCAATATAAAAAGAAAATATTAATCCCATCTTCAATAACAATTCTG
TAGCATGGTTAACTATAAAATGGATAAATATTACATTCTGACATGACATA
TGCTTAAATATTACAAAAACATATAAAGTTCATGCCTCAACCCACGCATG
TAGGCATCCTTATAATTGCAAACGGCTATTTAAAAGGATATCCAATAATA
TCTTCGTATATAACCTCCACTTGCCTAGCACAACCTCCATAATGTCTAAC
TTGAGGTTGTATGGACACCACCTACAAATGAAACCATGGAGTCAACCCCA
CAAACATTGCGACCCATGCAAATCTTATAATATCCATTCTCTCCCCAGTT
CTCTCCCCAGGAGTTCTTTATGATCCAGTAAGGCTTCCCCTTGAAACGGA
TCGGGGCGAAACCTGAAGATCCATACCCCACGATAAGCACTCCATGATCC
AAATACTTCCCGCAAATGTATGGGCATGAAACTCCTCCAATATATGTTTG
CATCCAAACGGAATTGATACCCACTGCCAAAGGGCCATGTTTCACCAAAT
TTGCACCCATTTGATCTTCATCAGAGGAAATAACCCTGAAATTAGATACA
GCTGCACCAATTTTGCTTTTGTCAAATTTGCAGGAACCACCGTCGGTCCC
AGTGTAAGGGTAGTCCTTCTCTCGCTCAACCCCACCA
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