CB290625

Overview
NameCB290625
Unique NameCB290625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:783..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 51/141 (36.17%), Postives = 66/141 (46.81%), Query Frame = -2
Query:  326 GVEREKDYPYTGTDGGSCKFDKSK-IGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVW-MQTYIGGVSCPYICGKYLD---HGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSF 733
            G+  E  YPY G DG  CKF   K IG       +   DE+ M   +  + P++           Y  G+     C K  D   H VL VGYG          G PYWI+KNSWG  WG NGY+ I  G+N+CG+ +  S+
Sbjct:  198 GIMGEDTYPYQGKDG-YCKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEKN-------GIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 330          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.758e-15
Identity = 51/145 (35.17%), Postives = 72/145 (49.66%), Query Frame = -2
Query:  326 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNV------CGVDSMVSF 736
            GG+  EKDYPY GT+G      K+     +  +  + S ++      V + P++V I++     Q Y  G+     CG  +DH V+ VGYGS         G  YWI++NSWG  WGE+GY  I M RNV      CG+    S+
Sbjct:  179 GGLNTEKDYPYHGTNGKCNSLLKNSRVVTIDGYEDVPSKDETALKRAVSYQPVSVAIDAGGRAFQHYQSGIFTGK-CGTNMDHAVVAVGYGSEN-------GVDYWIVRNSWGTRWGEDGY--IRMERNVASKSGKCGIAIEASY 313          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.758e-15
Identity = 50/135 (37.04%), Postives = 70/135 (51.85%), Query Frame = -2
Query:  344 GVEREKDYPYTGTDGGSCKFDKSKIGAAVSNF-RVISSDEDQMGANLVKHGPLAVGINSVWMQ--TYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGR-NVCGV 733
            G++ E  YPY   D  +C++D   IGA VS++    S DE  +   +   GP++V I++      +Y GGV     C   Y +H V  VGYG+         G  YWI+KNSWG  WGE+GY K+   R N C +
Sbjct:  187 GIDTESSYPYKAIDD-NCRYDAGNIGATVSSYVEPASGDESALQHAVQNEGPVSVCIDAGQSSFGSYGGGVYYEPNCDSWYANHAVTAVGYGTDA------NGGDYWIVKNSWGAWWGESGYIKMARNRDNNCAI 314          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.758e-15
Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = -2
Query:  326 GVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVIS-SDEDQMGANLVKHGPLAVGINSVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVSF 733
            G++ +  YPY   D   C++D     A  S +  +    ED +   +   GP++VG+++     ++   GV     C + ++HGVL+VGYG          GK YW++KNSWG N+GE GY ++   + N CG+ S  S+
Sbjct:  197 GIDSDASYPYKAMDQ-KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 328          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATK_PIG (Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.758e-15
Identity = 51/141 (36.17%), Postives = 73/141 (51.77%), Query Frame = -2
Query:  326 GVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVI-SSDEDQMGANLVKHGPLAVGINS--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVSF 733
            G++ E  YPY G D  +C ++ +   A    +R I   +E  +   + + GP++V I++     Q Y  GV     C    L+H VL VGYG         KGK +WIIKNSWGENWG  GY  +   + N CG+ ++ SF
Sbjct:  195 GIDSEDAYPYVGQDE-NCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQ-------KGKKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASF 327          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 46/131 (35.11%), Postives = 72/131 (54.96%), Query Frame = -2
Query:  344 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGV 736
            GGV   ++ PY G DG  CK    ++  + S  R +  +E+++   LV +GP++V I+   +  Y  G++      + L+H VL+VGYG     P       YWI+KNSWG  WGE GY+++   +N CG+
Sbjct:  202 GGVVSAENEPYYGFDG-VCKKSPFELSISGSR-RYVLQNENKLRELLVVNGPISVAIDVSDLINYKAGIADICENNEGLNHAVLLVGYGVKNDVP-------YWILKNSWGAEWGEEGYFRVQRDKNSCGM 323          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 50/141 (35.46%), Postives = 71/141 (50.35%), Query Frame = -2
Query:  326 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVW--MQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVSF 736
            GG++ E+ YPY  T+  SCK++     A  + F  I   E  +   +   GP++V I++       Y  G+     C    +DHGVL+VGYG   F         YW++KNSWGE WG  GY K+    RN CG+ S  S+
Sbjct:  194 GGLDSEESYPYEATEE-SCKYNPEYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFMFYKEGIYFEPDCSSEDMDHGVLVVGYG---FESTESDNSKYWLVKNSWGEEWGMGGYIKMAKDRRNHCGIASAASY 330          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 51/141 (36.17%), Postives = 72/141 (51.06%), Query Frame = -2
Query:  326 GVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVI-SSDEDQMGANLVKHGPLAVGINS--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVSF 733
            G++ E  YPY G D  SC ++ +   A    +R I   +E  +   + + GP++V I++     Q Y  GV     C    L+H VL VGYG         KG  +WIIKNSWGENWG  GY  +   + N CG+ ++ SF
Sbjct:  195 GIDSEDAYPYVGQDE-SCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPISVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQ-------KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASF 327          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATC_HUMAN (Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 49/148 (33.11%), Postives = 72/148 (48.65%), Query Frame = -2
Query:  335 GVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISS-----DEDQMGANLVKHGPLAVGIN----------SVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSM 733
            G+  E  +PYTGTD   CK  +       S +  +       +E  M   LV HGP+AV              ++  T   G+  P+   +  +H VL+VGYG+   +     G  YWI+KNSWG  WGENGY++I  G + C ++S+
Sbjct:  315 GLVEEACFPYTGTDS-PCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT---GLRDPFNPFELTNHAVLLVGYGTDSAS-----GMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESI 453          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 48/145 (33.10%), Postives = 80/145 (55.17%), Query Frame = -2
Query:  326 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNV------CGVDSMVSF 736
            GG++ +++YPY+   G SCK  + ++  +++ F+ ++ + +    + V   P++V + +     Q Y  G+     CG   +HGV+IVGYG+         GK YWI++NSWG+NWG  GY  I M RNV      CG+  + S+
Sbjct:   79 GGIDTQQNYPYSAVQG-SCKPYRLRV-VSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGP-CGTAQNHGVVIVGYGTQS-------GKNYWIVRNSWGQNWGNQGY--IWMERNVASSAGLCGIAQLPSY 211          
The following BLAST results are available for this feature:
BLAST of CB290625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CATH_HUMAN2.112e-1536.17Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CYSP4_BRANA2.758e-1535.17Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CRUST_PANBO2.758e-1537.04Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]
CATS_HUMAN2.758e-1532.14Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CATK_PIG2.758e-1536.17Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1[more]
CATV_GVCP3.602e-1535.11Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATL1_CERAE3.602e-1535.46Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
CATK_CANFA3.602e-1536.17Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]
CATC_HUMAN3.602e-1533.11Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=... [more]
ERVB_TABDI4.705e-1533.10Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cf05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290625 ID=CB290625; Name=CB290625; organism=Citrus sinensis; type=EST; length=737bp
TTTTATTTTTTTTTTTTTTTAAAATATAACATTATAATATTTCTACAAGC
CTGCCCAATATAAAAAGAAAATATTAATCCCATCTTCAATAACAATTCTG
TAGCATGGTTAACTATAAAATGGATAAATATTACATTCTGACATGACATA
TGCTTAAATATTACAAAAACATATAAAGTTCATGCCTCAACCCACGCATG
TAGGCATCCTTATAATTGCAAACGGCTATTTAAAAGGATATCCAATAATA
TCTTCGTATATAACCTCCACTTGCCTAGCACAACCTCCATAATGTCTAAC
TTGAGGTTGTATGGACACCACCTACAAATGAAACCATGGAGTCAACCCCA
CAAACATTGCGACCCATGCAAATCTTATAATATCCATTCTCTCCCCAGTT
CTCTCCCCAGGAGTTCTTTATGATCCAGTAAGGCTTCCCCTTGAAACGGA
TCGGGGCGAAACCTGAAGATCCATACCCCACGATAAGCACTCCATGATCC
AAATACTTCCCGCAAATGTATGGGCATGAAACTCCTCCAATATATGTTTG
CATCCAAACGGAATTGATACCCACTGCCAAAGGGCCATGTTTCACCAAAT
TTGCACCCATTTGATCTTCATCAGAGGAAATAACCCTGAAATTAGATACA
GCTGCACCAATTTTGCTTTTGTCAAATTTGCAGGAACCACCGTCGGTCCC
AGTGTAAGGGTAGTCCTTCTCTCGCTCAACCCCACCA
back to top