CB290626

Overview
NameCB290626
Unique NameCB290626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290626_ssr35 microsatellite CB290626_ssr35:35..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7034 contig Csv1_Contig7034:104..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290626 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.480e-31
Identity = 84/224 (37.50%), Postives = 118/224 (52.68%), Query Frame = 2
Query:  140 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDE 799
            +H L A+  ++ +K+  ++ Y   EE  +R  V++ N++  +          H  T     F D+T  EFR+   G   R        + P+    + P   DWR+ G VT VK+QG CGSCW+FSATGALEG  F  TG+LVSLSEQ LVDC            + GCNGGLM+ AF+Y+   GG++ E+ YPY  T+  SCK++     A  + F  I   E
Sbjct:   22 NHSLEAQ--WTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYSQGKHSFTMAMNTFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDC-------SGPQGNEGCNGGLMDYAFQYVADNGGLDSEESYPYEATE-ESCKYNPEYSVANDTGFVDIPKQE 232          
BLAST of CB290626 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.297e-31
Identity = 77/219 (35.16%), Postives = 120/219 (54.79%), Query Frame = 2
Query:  167 FSLFKSKFSKTYATQEEHDYRFRVFKAN---LRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFL----GLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF-SVISSDE 799
            F L+KS+  + Y   EE   R  +FK N   +R     +    +   G+ KF+D+TP EF +++L     +++++++     K      +  P  +DWR  G +T VK QG CG  W+FSATGA+E AH ++TG+LVSLSEQ+LVDC  E +         G   G    +FE++L+ GG+  + DYPY   + G CK +K +    +  + ++I SDE
Sbjct:   44 FQLWKSEHGRVYHNHEEEAKRLEIFKNNSNYIRDMNANRKSPHSHRLGLNKFADITPQEFSKKYLQAPKDVSQQIKMANKKMKKEQYSCDHPPASWDWRKKGVITQVKYQGGCGRGWAFSATGAIEAAHAIATGDLVSLSEQELVDCVEESE---------GSYNGWQYQSFEWVLEHGGIATDDDYPYRAKE-GRCKANKIQDKVTIDGYETLIMSDE 252          
BLAST of CB290626 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.297e-31
Identity = 76/219 (34.70%), Postives = 117/219 (53.42%), Query Frame = 2
Query:  152 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGL-NRRLRL----------PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 775
            +A  +F  F ++++K Y +++E  YR+ +F+ N+    ++   + +AV+ + +F+D+  +E   +  GL +  L L          PA  Q+         P  FDWR    +T VKDQG CG+CW F++ GALE  + +    L+ LSEQQLVDCD           D GC+GGL+++A+E I+K GGVE+E DY Y   +   C     K A  V N
Sbjct:   35 SAPLYFEKFITQYNKQYKSEDEKKYRYNIFRHNIESINQKNSRNDSAVYKINRFADMPKNEIVIRHTGLASGELGLNFCETIVVDGPAQRQR---------PVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCDF---------VDMGCDGGLIHTAYEQIMKMGGVEQEFDYSYK-AERQPCALKPHKFATGVRN 234          
BLAST of CB290626 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 3.297e-31
Identity = 80/215 (37.21%), Postives = 114/215 (53.02%), Query Frame = 2
Query:  158 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND---LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 781
            +HH+ L+K  + K Y  + E   R  +++ NL+      L     +H    G+    D+T  E     + L   LR+P+  Q+     +N    LP   DWR+ G VT VK QG+CG+CW+FSA GALE    L TG+LVSLS Q LVD    C  E+ G  + GCNGG M +AF+YI+   G++ +  YPY   D   C++D    AA  S ++
Sbjct:   25 DHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEV----MSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----CSTEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKYT 228          
BLAST of CB290626 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.297e-31
Identity = 70/219 (31.96%), Postives = 125/219 (57.08%), Query Frame = 2
Query:  167 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH-GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL-----PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQ 805
            F  + +++ + Y   +E   RF++FK N++  +     +  +   G+ +F+D+T SEF  Q+ G++    LP + ++ P++  +D+     P   DWRD+GAV  VK+Q  CGSCWSF+A   +EG + + TG LVSLSEQ+++DC          +   GC GG +N A+++I+   GV  E++YPY     G+C  +    +A ++ +S +  ++++
Sbjct:   37 FEEWMAEYGRVYKDDDEKMRRFQIFKNNVKHIETFNSRNENSYTLGINQFTDMTKSEFVAQYTGVS----LPLNIEREPVVSFDDVNISAVPQSIDWRDYGAVNEVKNQNPCGSCWSFAAIATVEGIYKIKTGYLVSLSEQEVLDC----------AVSYGCKGGWVNKAYDFIISNNGVTTEENYPYLAYQ-GTCNANSFPNSAYITGYSYVRRNDER 240          
BLAST of CB290626 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.307e-31
Identity = 86/218 (39.45%), Postives = 121/218 (55.50%), Query Frame = 2
Query:  164 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHGA-VTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQM 808
            HF  +  +  K Y++ EE+ +R + F +NLR        + T   G+ +FSD++  E +R++L    +      A K+  L  T   P   DWR  G  VT VK+QG+CGSCW+FS TGALE A  ++TG+L  L+EQQLVDC    +       + GC GGL + AFEYI    G+  E  YPY G D G CK+  SK  A V + + I+ +DE+ M
Sbjct:   34 HFQSWMVQHQKKYSS-EEYYHRLQAFASNLREINAHNARNHTFKMGLNQFSDMSFDELKRKYLWSEPQ---NCSATKSNYLRGTGPYPPSMDWRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEYIRYNKGIMGEDTYPYRGQD-GDCKYQPSKAIAFVKDVANITLNDEEAM 239          
BLAST of CB290626 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.636e-30
Identity = 82/214 (38.32%), Postives = 111/214 (51.87%), Query Frame = 2
Query:  158 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND---LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 778
            +HH+ L+K    +    Q E D R  +++ NL+      L     +H    G+    D+TP E     +G    LR+P    ++  L ++    LP   DWR+ G VT VK QG+CGSCW+FSA GALEG   L TG+LVSLS Q LVDC  E   E+ G  + GC GG M  AF+YI+    ++ E  YPY   D   C +D    AA  S +
Sbjct:   23 DHHWDLWKKTRMRRNTDQNEEDVRRLIWEKNLKFIMLHNLEHSMGMHSYSVGMNHMGDMTPEEV----IGYMGSLRIPRPWNRSGTLKSSSNQTLPDSVDWREKGCVTNVKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSLSAQNLVDCSTE---EKYG--NKGCGGGFMTEAFQYIIDT-SIDSEASYPYKAMD-EKCLYDPKNRAATCSRY 225          
BLAST of CB290626 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.636e-30
Identity = 80/215 (37.21%), Postives = 122/215 (56.74%), Query Frame = 2
Query:  164 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHG-AVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDED 802
            HF  +  +  KTY++ E +++R ++F  N R+ +     + T    + +FSD++ +E + +FL    +      A K+  L  T   P+  DWR  G  V+ VK+QGAC SCW+FS TGALE A  +++G+++SL+EQQLVDC    +       + GC GGL + AFEYIL   G+  E  YPY G D  SC+F+  K  A V N   I+ +++
Sbjct:   32 HFKSWMKQHQKTYSSVE-YNHRLQMFANNWRKIQAHNQRNHTFKMALNQFSDMSFAEIKHKFLWSEPQ---NCSATKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACASCWTFSTTGALESAVAIASGKMLSLAEQQLVDCAQAFN-------NHGCKGGLPSQAFEYILYNKGIMEEDSYPYIGKD-SSCRFNPQKAVAFVKNVVNITLNDE 234          
BLAST of CB290626 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.636e-30
Identity = 82/221 (37.10%), Postives = 116/221 (52.49%), Query Frame = 2
Query:  167 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAV---SNFSVISSDEDQMAANL 820
            F+ F  ++ K+Y +  E   RFR+F  +L   +           G+ +FSD++  EF+   LG  +       A    +     LP   DWR+ G V+ VK+Q  CGSCW+FS TGALE A+  +TG+ +SLSEQQLVDC         G  + GCNGGL + AFEYI   GG++ E+ YPY G + G C +     A  V    N ++ + DE + A  L
Sbjct:   61 FARFAVRYGKSYESAAEVRRRFRIFSESLEEVRSTNRKGLPYRLGINRFSDMSWEEFQATRLGAAQTCSATL-AGNHLMRDAAALPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKNISLSEQQLVDC-------AGGFNNFGCNGGLPSQAFEYIKYNGGIDTEESYPYKGVN-GVCHYKAENAAVQVLDSVNITLNAEDELKNAVGL 272          
BLAST of CB290626 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.137e-30
Identity = 81/222 (36.49%), Postives = 114/222 (51.35%), Query Frame = 2
Query:  158 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQM 808
            ++H+ L+K    K Y  + E + R  +++ NL+      L     +H    G+    D+T  E   + +G  R  R               LP   DWR+ G VT VK QG+CG+CW+FSA GALEG   L TG+L+SLS Q LVDC +E   E+ G  + GC GG M  AF+YI+  GG+E +  YPY  TD   C ++    AA  S +  +   DED +
Sbjct:   33 DYHWDLWKKTHEKEYKDKNEEEVRRLIWEKNLKFIMIHNLEYSMGMHTYQVGMNDMGDMTNEEISCR-MGALRISRQSPKTVTFRSYSNRTLPDTVDWREKGCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNE---EKYG--NKGCGGGYMTEAFQYIIDNGGIEADASYPYKATD-EKCHYNSKNRAATCSRYIQLPFGDEDAL 247          
The following BLAST results are available for this feature:
BLAST of CB290626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
CATL1_CERAE1.480e-3137.50Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
P34_SOYBN3.297e-3135.16P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
CATV_NPVSE3.297e-3134.70Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATS_HUMAN3.297e-3137.21Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
BROM1_ANACO3.297e-3131.96Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
CATH_BOVIN4.307e-3139.45Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATS_RAT1.636e-3038.32Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATH_MOUSE1.636e-3037.21Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
ALEU_HORVU1.636e-3037.10Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATS_MOUSE2.137e-3036.49Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cf05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290626 ID=CB290626; Name=CB290626; organism=Citrus sinensis; type=EST; length=820bp
CAAATCGAAAATGGAGCGCCTTATTCTCTCCTCTCTCCTCCTCCTCCTCC
TATCTTCTGTGCTTGCGTCCGCTGTAGCTGTCAACGACGACGATGCTATG
ATCAGACAGGTCGTGCCGTCAGACGGCGAACAATCCGAAGATCATCTCCT
GAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCCAAGACTT
ACGCCACCCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAAGGCTAAT
CTGCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTGTCCACGG
TGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGTCAGTTCC
TTGGCTTGAATAGGCGGCTTCGGCTGCCAGCTGACGCTCAAAAGGCTCCT
ATTCTCCCCACCAACGATCTTCCTACTGACTTTGACTGGCGTGATCACGG
CGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGCTGGTCGT
TTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGACGGGCGAG
CTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACGAGTGTGA
TCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGGCTAATGA
ACTCTGCCTTTGAGTACATACTCAAGGCTGGTGGGGTTGAGCGAGAGAAG
GACTACCCTTACACTGGGACCGACGGTGGTTCCTGCAAATTTGACAAAAG
CAAAATTGCTGCAGCTGTATCTAATTTCAGTGTTATTTCCTCTGATGAAG
ATCAAATGGCTGCAAATTTG
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