CB290630

Overview
NameCB290630
Unique NameCB290630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_CLOAB (ATP synthase subunit beta OS=Clostridium acetobutylicum GN=atpD PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.800e-53
Identity = 100/168 (59.52%), Postives = 131/168 (77.98%), Query Frame = 2
Query:  296 IGQVCQVIGAVVDVRFD-EGLPPILTALEV-VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 793
            +G++ QVIG VVD++FD E LP I  ++E+ +  + +L+ EV QH+G+ +VRTIAM+GT+GL RG   +NTG PI+VPVG   LGR+ NV+G+ IDE GD+  + Y PIHR AP F EQ+ + ++  TGIKV+DLLAPYQ+GGKIGLFGGAGVGKTVLI ELINN+AK
Sbjct:    5 VGKIVQVIGPVVDIKFDAENLPDIYNSIEIDMGDNKKLIAEVEQHVGDDIVRTIAMEGTDGLKRGMEAVNTGKPISVPVGENVLGRLFNVLGQTIDEAGDMNADKYYPIHRPAPTFEEQSVQPEMFETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVLIQELINNIAK 172          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_DESDG (ATP synthase subunit beta OS=Desulfovibrio desulfuricans (strain G20) GN=atpD PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.482e-53
Identity = 107/171 (62.57%), Postives = 131/171 (76.61%), Query Frame = 2
Query:  296 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 793
            IG++ QVIGAVVDV F +G LP IL AL + + +      L+ EVAQH+G+ VVRTIAMD TEGLVRG  V +TG+PI VPVG  +LGRIMNV+G P+DE GD+     LPIHR AP F EQ T  ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV++ME+INN+AK
Sbjct:    4 IGKITQVIGAVVDVEFADGNLPNILNALVIKNPNNADCPELICEVAQHLGDNVVRTIAMDATEGLVRGMEVTDTGNPIMVPVGSASLGRIMNVVGRPVDEMGDIDAAKSLPIHRPAPEFNEQNTNVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMINNIAK 174          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_CLOK5 (ATP synthase subunit beta OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=atpD PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.482e-53
Identity = 95/167 (56.89%), Postives = 134/167 (80.24%), Query Frame = 2
Query:  296 IGQVCQVIGAVVDVRFDE-GLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 793
            IG+V QVIG VVD++FDE  LP I  A+ +   + +++ EVAQH+G+ +VRTI+M+ T+GL+RG   L+ G+PI+VPVG+  LGR+ N++G+PIDE G+++ + Y PIHR AP+F +Q+ + ++  TGIKV+DL+APYQ+GGKIGLFGGAGVGKTV+I ELINN+AK
Sbjct:    4 IGKVVQVIGPVVDIKFDEENLPDIYNAISIESGNAKIITEVAQHLGDDIVRTISMESTDGLMRGMDALDIGAPISVPVGKPVLGRLFNMLGQPIDENGEVEADEYSPIHRPAPSFEDQSVKPEMFETGIKVIDLIAPYQKGGKIGLFGGAGVGKTVIIQELINNIAK 170          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_DESVV (ATP synthase subunit beta OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=atpD PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.466e-53
Identity = 105/171 (61.40%), Postives = 131/171 (76.61%), Query Frame = 2
Query:  296 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVD----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 793
            IG++ QVIGAVVDV F  G LP IL AL++ +     +  LV EVAQH+G+ +VRTIAMD TEGLVRG    +TG PI VPVG+ +LGRIMNV+G P+DE G +  +  LPIHR AP F EQ T+ ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV++ME+INN+AK
Sbjct:    5 IGKIVQVIGAVVDVEFPSGQLPNILNALDIKNPNNTDAPDLVCEVAQHLGDNIVRTIAMDATEGLVRGMEASDTGKPIMVPVGKASLGRIMNVVGRPVDELGPINADKSLPIHRAAPEFTEQNTKVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMINNIAK 175          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_DESVH (ATP synthase subunit beta OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=atpD PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.466e-53
Identity = 105/171 (61.40%), Postives = 131/171 (76.61%), Query Frame = 2
Query:  296 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVD----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 793
            IG++ QVIGAVVDV F  G LP IL AL++ +     +  LV EVAQH+G+ +VRTIAMD TEGLVRG    +TG PI VPVG+ +LGRIMNV+G P+DE G +  +  LPIHR AP F EQ T+ ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV++ME+INN+AK
Sbjct:    5 IGKIVQVIGAVVDVEFPSGQLPNILNALDIKNPNNTDAPDLVCEVAQHLGDNIVRTIAMDATEGLVRGMEASDTGKPIMVPVGKASLGRIMNVVGRPVDELGPINADKSLPIHRAAPEFTEQNTKVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMINNIAK 175          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_THENN (ATP synthase subunit beta OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=atpD PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.106e-52
Identity = 104/171 (60.82%), Postives = 135/171 (78.95%), Query Frame = 2
Query:  287 KGAIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 790
            KG+ G +  V+G VVDV+F +E LP I  ALEVV+     ++VLEV Q +G+GVVRT+AMD T+GL++G  V++TG PIT PVG+  LGRI+NVIGEP+DE G++K++   PIHR AP  +EQ+TE +IL TGIKV+DLLAP+ +GGKIG FGGAGVGKTVL+MELI N+A
Sbjct:    3 KGSKGYIVGVMGPVVDVKFPEEELPDIFNALEVVNPQTGQKIVLEVEQLIGDGVVRTVAMDSTDGLMKGLEVVDTGEPITAPVGKEVLGRILNVIGEPVDEAGEIKSKERWPIHRPAPELIEQSTEIEILETGIKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMELIRNIA 173          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_STIAU (ATP synthase subunit beta OS=Stigmatella aurantiaca GN=atpD PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.106e-52
Identity = 106/172 (61.63%), Postives = 129/172 (75.00%), Query Frame = 2
Query:  296 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 793
            +G++ QV+G V+DV F  G LP + TAL+V + S+      L +EVAQH+GE +VR I+MD TEGL RGQ V NTG+PI VPVG+ TLGRI+NVIGEP+DE+G + +    PIHR AP FV+Q    Q   TGIKV+DLL PY RGGKIGLFGGAGVGKTVL+MELI NVAK
Sbjct:    8 VGKITQVLGPVIDVEFPPGGLPEVYTALKVTNTSISAEADNLTIEVAQHLGENMVRCISMDSTEGLARGQAVKNTGAPIQVPVGQGTLGRILNVIGEPVDERGPITSSQTWPIHRPAPTFVDQDVRVQAFETGIKVIDLLGPYTRGGKIGLFGGAGVGKTVLLMELIVNVAK 179          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_THESQ (ATP synthase subunit beta OS=Thermotoga sp. (strain RQ2) GN=atpD PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.463e-52
Identity = 104/171 (60.82%), Postives = 134/171 (78.36%), Query Frame = 2
Query:  287 KGAIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 790
            KG+ G +  ++G VVDV+F +E LP I  ALEVV+     ++VLEV Q +G+GVVRT+AMD T+GL +G  V++TG+PIT PVG+  LGRI+NVIGEP+DE G++K +   PIHR AP  VEQ+TE +IL TGIKV+DLLAP+ +GGKIG FGGAGVGKTVL+MELI N+A
Sbjct:    3 KGSKGFIVSIMGPVVDVKFPEEELPDIYNALEVVNPQTGQKVVLEVEQLIGDGVVRTVAMDSTDGLTKGLEVVDTGAPITAPVGKEVLGRILNVIGEPVDEAGEIKAKERWPIHRPAPELVEQSTEIEILETGIKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMELIRNIA 173          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_THEP1 (ATP synthase subunit beta OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=atpD PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.463e-52
Identity = 104/171 (60.82%), Postives = 134/171 (78.36%), Query Frame = 2
Query:  287 KGAIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 790
            KG+ G +  ++G VVDV+F +E LP I  ALEVV+     ++VLEV Q +G+GVVRT+AMD T+GL +G  V++TG+PIT PVG+  LGRI+NVIGEP+DE G++K +   PIHR AP  VEQ+TE +IL TGIKV+DLLAP+ +GGKIG FGGAGVGKTVL+MELI N+A
Sbjct:    3 KGSKGFIVSIMGPVVDVKFPEEELPDIYNALEVVNPQTGQKVVLEVEQLIGDGVVRTVAMDSTDGLTKGLEVVDTGAPITAPVGKEVLGRILNVIGEPVDEAGEIKAKERWPIHRPAPELVEQSTEIEILETGIKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMELIRNIA 173          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_THEMA (ATP synthase subunit beta OS=Thermotoga maritima GN=atpD PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.463e-52
Identity = 104/171 (60.82%), Postives = 134/171 (78.36%), Query Frame = 2
Query:  287 KGAIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 790
            KG+ G +  ++G VVDV+F +E LP I  ALEVV+     ++VLEV Q +G+GVVRT+AMD T+GL +G  V++TG+PIT PVG+  LGRI+NVIGEP+DE G++K +   PIHR AP  VEQ+TE +IL TGIKV+DLLAP+ +GGKIG FGGAGVGKTVL+MELI N+A
Sbjct:    3 KGSKGFIVSIMGPVVDVKFPEEELPDIYNALEVVNPQTGQKVVLEVEQLIGDGVVRTVAMDSTDGLTKGLEVVDTGAPITAPVGKEVLGRILNVIGEPVDEAGEIKAKERWPIHRPAPELVEQSTEIEILETGIKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMELIRNIA 173          
The following BLAST results are available for this feature:
BLAST of CB290630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_CLOAB3.800e-5359.52ATP synthase subunit beta OS=Clostridium acetobuty... [more]
ATPB_DESDG6.482e-5362.57ATP synthase subunit beta OS=Desulfovibrio desulfu... [more]
ATPB_CLOK56.482e-5356.89ATP synthase subunit beta OS=Clostridium kluyveri ... [more]
ATPB_DESVV8.466e-5361.40ATP synthase subunit beta OS=Desulfovibrio vulgari... [more]
ATPB_DESVH8.466e-5361.40ATP synthase subunit beta OS=Desulfovibrio vulgari... [more]
ATPB_THENN1.106e-5260.82ATP synthase subunit beta OS=Thermotoga neapolitan... [more]
ATPB_STIAU1.106e-5261.63ATP synthase subunit beta OS=Stigmatella aurantiac... [more]
ATPB_THESQ2.463e-5260.82ATP synthase subunit beta OS=Thermotoga sp. (strai... [more]
ATPB_THEP12.463e-5260.82ATP synthase subunit beta OS=Thermotoga petrophila... [more]
ATPB_THEMA2.463e-5260.82ATP synthase subunit beta OS=Thermotoga maritima G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cf07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290630 ID=CB290630; Name=CB290630; organism=Citrus sinensis; type=EST; length=798bp
GACTATTCTCATTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTA
GACTCTTATCATCTCTCCTTCGCTCGTCTGTCCGCCGATCTCCCTCCAAA
TCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTGCCGCCACGCGCCGCGC
GTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAG
CAGCCGCCACTGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAA
GGCGGCGGTGGTAAAATCACCGATGAGTTTACTGGAAAGGGCGCGATCGG
TCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGG
GGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGTAGATCACTCCGTTCGG
TTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTAT
TGCTATGGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATA
CTGGCTCTCCAATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATT
ATGAATGTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGA
ACATTACTTGCCCATCCACAGAGAGGCTCCAGCATTCGTTGAGCAGGCAA
CTGAACAACAGATTCTAGTCACTGGCATCAAGGTTGTTGATCTCCTTGCT
CCATACCAAAGAGGAGGGAAAATTGGGCTTTTTGGTGGTGCTGGTGTAGG
AAAAACTGTGCTTATTATGGAACTTATTAACAATGTTGCAAAGGCTCA
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