CB290630

Overview
NameCB290630
Unique NameCB290630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPB (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB18) GN=atpD PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.192e-60
Identity = 119/166 (71.69%), Postives = 137/166 (82.53%), Query Frame = 2
Query:  299 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            G++ QVIGAVVDV+F+  LP IL A+E  + + RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKA
Sbjct:    9 GRITQVIGAVVDVQFEGHLPAILNAVETKNGNNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPIMVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKA 174          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP2 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain HaA2) GN=atpD PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.192e-60
Identity = 119/166 (71.69%), Postives = 136/166 (81.93%), Query Frame = 2
Query:  299 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKA
Sbjct:    9 GRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPIMVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKA 174          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_BRASO (ATP synthase subunit beta OS=Bradyrhizobium sp. (strain ORS278) GN=atpD PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.192e-60
Identity = 120/172 (69.77%), Postives = 138/172 (80.23%), Query Frame = 2
Query:  281 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            T    IG+V QVIGAVVDV+F+  LP IL +LE  +   RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +TG+PI VPVG  TLGRI+NVIGEPIDE G +K ++   IH+EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKA
Sbjct:    3 TAANQIGRVTQVIGAVVDVQFEGHLPAILNSLETKNGGNRLVLEVAQHLGESTVRAIAMDTTEGLVRGQEVTDTGAPIRVPVGEGTLGRIINVIGEPIDEAGPVKADNVRAIHQEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKA 174          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_SILPO (ATP synthase subunit beta OS=Silicibacter pomeroyi GN=atpD PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.475e-60
Identity = 117/167 (70.06%), Postives = 135/167 (80.84%), Query Frame = 2
Query:  293 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 793
            A G+V Q+IGAVVDV+FD+ LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRG  V +TG PI+VPVG  TLGRI+NVIGEP+DEKG +       IH+ AP+F EQ+T   ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK
Sbjct:    4 AKGKVTQIIGAVVDVQFDDALPEILNALETENNGKRLVLEVAQHLGENTVRTIAMDATEGLVRGAVVTDTGGPISVPVGAATLGRILNVIGEPVDEKGPVNATETRAIHQPAPSFDEQSTSSDILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAK 170          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_NITHX (ATP synthase subunit beta OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=atpD PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.475e-60
Identity = 119/166 (71.69%), Postives = 137/166 (82.53%), Query Frame = 2
Query:  299 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +K E    IH+EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKA
Sbjct:    9 GRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVKDTGNPILVPVGVGTLGRIMNVIGEPVDEQGPVKAEDMRAIHQEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKA 174          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB2_DINSH (ATP synthase subunit beta 2 OS=Dinoroseobacter shibae (strain DFL 12) GN=atpD2 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.150e-60
Identity = 117/167 (70.06%), Postives = 135/167 (80.84%), Query Frame = 2
Query:  293 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 793
            A G+V QVIGAVVDV+F++ LP IL AL   ++  +LVLEVAQH+GE  VRTIAMD TEGLVRG  V +TG PIT+PVG  TLGRIMNVIGEPIDEKG ++      IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK
Sbjct:    4 AKGKVTQVIGAVVDVQFEDTLPEILNALNTENNGKKLVLEVAQHLGENTVRTIAMDATEGLVRGAEVTDTGGPITIPVGNATLGRIMNVIGEPIDEKGPVEASESRAIHQPAPEFSEQSTGSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAK 170          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_ERYLH (ATP synthase subunit beta OS=Erythrobacter litoralis (strain HTCC2594) GN=atpD PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.220e-59
Identity = 117/165 (70.91%), Postives = 135/165 (81.82%), Query Frame = 2
Query:  299 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 793
            G + QVIGAVVDV+F   LP ILTALE  +    LVLEVAQH+GE  VRTIAMDGT+GLVRGQ V+NTG+ I+VPVG  TLGRIMNV+GEPID +G +  +   PIH EAPAFV+Q+T+  ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK
Sbjct:   13 GTISQVIGAVVDVQFPGELPAILTALETENGDTTLVLEVAQHLGENTVRTIAMDGTDGLVRGQEVINTGAQISVPVGPKTLGRIMNVVGEPIDMRGPVGADKANPIHAEAPAFVDQSTDAAILVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAK 177          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_AZOC5 (ATP synthase subunit beta OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpD PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.220e-59
Identity = 118/166 (71.08%), Postives = 135/166 (81.33%), Query Frame = 2
Query:  299 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            G++ QVIGAVVDV+FD  LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG PI VPVG  TLGRIMNVIGE +DE G +  E    IH++AP++ EQ+TE ++LVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AKA
Sbjct:    6 GRITQVIGAVVDVQFDSHLPEILNALETTNQGNRLVLEVAQHLGENTVRTIAMDSTEGLVRGQAVEDTGGPIMVPVGEATLGRIMNVIGEAVDELGPVVGEAKRAIHQQAPSYSEQSTEAEMLVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKA 171          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_YEAST (ATP synthase subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=ATP2 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.593e-59
Identity = 117/167 (70.06%), Postives = 138/167 (82.63%), Query Frame = 2
Query:  299 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            G+V  VIGA+VDV F++  LP IL ALE+     +LVLEVAQH+GE  VRTIAMDGTEGLVRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++   PIH + P+F EQ+T  +IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKA
Sbjct:   44 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKA 210          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_ZYMMO (ATP synthase subunit beta OS=Zymomonas mobilis GN=atpD PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.080e-59
Identity = 112/171 (65.50%), Postives = 138/171 (80.70%), Query Frame = 2
Query:  281 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 793
            + K  IG++ QVIG VVDV F+E LPP+LTALE  +    +VLEVAQH+GE VVRTI+MD T+GLVRGQ V++TGS I VPVG  TLGRIMNV+G P+DE+G + ++  +PIH +AP F EQ+T+  IL TGIKV+DLLAPY +GGK+GLFGGAGVGKTVLI ELINN+AK
Sbjct:    5 SSKKNIGRISQVIGPVVDVLFEEKLPPLLTALETKNQDATVVLEVAQHLGENVVRTISMDTTDGLVRGQEVVDTGSEIRVPVGPETLGRIMNVVGRPVDERGPIGSKQTMPIHADAPPFTEQSTDTAILTTGIKVIDLLAPYSKGGKVGLFGGAGVGKTVLIQELINNIAK 175          
The following BLAST results are available for this feature:
BLAST of CB290630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RHOPB4.192e-6071.69ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_RHOP24.192e-6071.69ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_BRASO4.192e-6069.77ATP synthase subunit beta OS=Bradyrhizobium sp. (s... [more]
ATPB_SILPO5.475e-6070.06ATP synthase subunit beta OS=Silicibacter pomeroyi... [more]
ATPB_NITHX5.475e-6071.69ATP synthase subunit beta OS=Nitrobacter hamburgen... [more]
ATPB2_DINSH7.150e-6070.06ATP synthase subunit beta 2 OS=Dinoroseobacter shi... [more]
ATPB_ERYLH1.220e-5970.91ATP synthase subunit beta OS=Erythrobacter litoral... [more]
ATPB_AZOC51.220e-5971.08ATP synthase subunit beta OS=Azorhizobium caulinod... [more]
ATPB_YEAST1.593e-5970.06ATP synthase subunit beta, mitochondrial OS=Saccha... [more]
ATPB_ZYMMO2.080e-5965.50ATP synthase subunit beta OS=Zymomonas mobilis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cf07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290630 ID=CB290630; Name=CB290630; organism=Citrus sinensis; type=EST; length=798bp
GACTATTCTCATTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTA
GACTCTTATCATCTCTCCTTCGCTCGTCTGTCCGCCGATCTCCCTCCAAA
TCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTGCCGCCACGCGCCGCGC
GTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAG
CAGCCGCCACTGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAA
GGCGGCGGTGGTAAAATCACCGATGAGTTTACTGGAAAGGGCGCGATCGG
TCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGG
GGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGTAGATCACTCCGTTCGG
TTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTAT
TGCTATGGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATA
CTGGCTCTCCAATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATT
ATGAATGTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGA
ACATTACTTGCCCATCCACAGAGAGGCTCCAGCATTCGTTGAGCAGGCAA
CTGAACAACAGATTCTAGTCACTGGCATCAAGGTTGTTGATCTCCTTGCT
CCATACCAAAGAGGAGGGAAAATTGGGCTTTTTGGTGGTGCTGGTGTAGG
AAAAACTGTGCTTATTATGGAACTTATTAACAATGTTGCAAAGGCTCA
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