CB290635

Overview
NameCB290635
Unique NameCB290635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290635 vs. ExPASy Swiss-Prot
Match: NIP32_ORYSJ (Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica GN=NIP3-2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.278e-11
Identity = 62/213 (29.11%), Postives = 96/213 (45.07%), Query Frame = 1
Query:  178 AEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFXGA 813
            AEF  TF  ++  + T+   +          + GIA + G  + VLV     ISG H+NPAV++ + +   L     L Y+  Q LG+I  +  VK     G Y  +  G   V    T  +    E + TFVL++ + + ATD       + V  L  + +G  + +  L   P TG  +NPAR+LG AI   +   +   W++ V    GA
Sbjct:   99 AEFFGTFTLIFTVLSTI---IMDEQHKGVESLLGIATSAGLAVTVLVLSLIHISGCHLNPAVSIAMTVFGHLPPAHLLPYIAAQILGSITASFAVK-----GMYHPVNPGIVTVPKVGTV-EAFFLEFVTTFVLLFIITALATD------PNAVKELIAVAVGATIMMNALVAGPSTGASMNPARTLGPAIATGR---YTQIWVYLVATPLGA 293          
BLAST of CB290635 vs. ExPASy Swiss-Prot
Match: AQP2_PROHA (Aquaporin-2 (Fragment) OS=Procavia capensis habessinica GN=AQP2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.976e-11
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  151 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV 462
            S +F RA ++EF+AT LF++  + + +     N   +   +  IA AFG  I  LV     ISG HINPAVT+   +   +S  RALFY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVLSEFLATLLFVFFGLGSAL-----NWPQALPSVLQIAMAFGLAIGTLVQTLGHISGAHINPAVTIACLVGCHVSFLRALFYLAAQLLGAVAGAALL 99          
BLAST of CB290635 vs. ExPASy Swiss-Prot
Match: AQP2_TALEU (Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.076e-11
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  151 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV 462
            S +F RA  AEF+AT +F++  + + +     N + S   +  IA AFG  I  LV     ISG HINPAVT+   +   +S  RA FY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVFAEFLATLIFVFFGLGSAL-----NWQQSLPSVLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of CB290635 vs. ExPASy Swiss-Prot
Match: AQP2_HORSE (Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  151 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV 462
            S +F RA +AEF+AT LF++  + + +     N   +   +  IA AFG  I  LV     +SG HINPAVT+   +   +S  RA FY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVLAEFLATLLFVFFGLGSAL-----NWPQAMPSVLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
The following BLAST results are available for this feature:
BLAST of CB290635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
NIP32_ORYSJ2.278e-1129.11Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica G... [more]
AQP2_PROHA2.976e-1139.42Aquaporin-2 (Fragment) OS=Procavia capensis habess... [more]
AQP2_TALEU5.076e-1139.42Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 P... [more]
AQP2_HORSE8.658e-1138.46Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cf10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290635 ID=CB290635; Name=CB290635; organism=Citrus sinensis; type=EST; length=831bp
GCAGAAATGGAAGGTAAAGAAGAGGATGTTAGACTGGGAGCCAACAAGTT
CGCCGAGAGGCAGCCGATTGGGACGGCGGCTCAGACCCAAGATGGGAAGG
ACTACCCTGAGCCCCCACCGGCGCCGCTCTTTGAGCCCGGCGAGCTCAAG
TCTTGGTCGTTTTACAGGGCCGGTATAGCCGAGTTCATAGCCACTTTTCT
TTTCTTGTACATCTCCGTACTGACAGTGATGGGCGTCGTCAAGTCCAATA
CCAAGTGCTCAACCGTCGGCATTCAAGGGATTGCATGGGCCTTCGGTGGC
ATGATCTTCGTGCTCGTTTACTGCACAGCTGGCATCTCGGGTGGTCATAT
CAACCCGGCGGTGACACTCGGCCTGTTCTTGGCGAGGAAGCTGTCGCTGA
CACGTGCACTTTTCTACATGGTGATGCAGTGTCTGGGAGCCATCTGCGGT
GCTGGCGTTGTAAAGGGTTTCATGGGTGCCGGCCAATACGGGCGGCTCGC
CGGCGGTGCCAACGTCGTAGCTCATGGCTACACCAAGGGTGATGGTCTTG
GTGCCGAGATTATTGGTACTTTTGTTCTTGTCTACACAGTTTTCTCTGCC
ACTGATGCCAAACGGAGCGCCAGGGACTCTCATGTTCCTATTTTGGCTCC
TCTGCCAATTGGGTTCGCTGTGTTTTTGGTTCACTTGGCTACCATCCCAA
TTACCGGAACTGGCATCAACCCAGCGAGGAGTCTTGGAGCTGCAATCATC
TACAACAAGGACCGCGGTTGGGATGACCACTGGATTTTCTGGGTGGGACC
ATTCGNTGGAGCTGGACTTGCAGCTTTGTAC
back to top