CB290668

Overview
NameCB290668
Unique NameCB290668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:61..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.905e-56
Identity = 113/209 (54.07%), Postives = 143/209 (68.42%), Query Frame = 2
Query:  251 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGVVTNWALVSMNHDTQSCMDPNVMEAK---------------VVVSSCGHDGPFG 811
            D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++ IIE SV+PGGG+WL GQLFSAMV+RKPAH+FL EL I Y+++  YVV+KHAALF ST++SK+L  PNVKLFNA   EDL+ +         V GVVTNW LV+  H TQ CMDPNV+E                 V++S+ GHDGPFG
Sbjct:   34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFG 242          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.245e-24
Identity = 65/173 (37.57%), Postives = 96/173 (55.49%), Query Frame = 2
Query:  278 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 796
            +K+ ++SR +   Y  D++   + D    GAG +G+   Y L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN V  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH
Sbjct:    2 LKDVVISRAIVESYFKDLLNNLELDVAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKIVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMVEVEDLVVKDDRVSGIVINWTPVKM---TGLHVDPLTVEAKYVIDSTGH 169          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.002e-24
Identity = 65/173 (37.57%), Postives = 96/173 (55.49%), Query Frame = 2
Query:  278 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 796
            ++E  +SR +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN +  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH
Sbjct:    2 LREVTISRAIIESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMIEVEDLVVKDNRVSGIVINWTPVLM---TGLHVDPLTVEAKYVIDSTGH 169          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.533e-24
Identity = 64/173 (36.99%), Postives = 95/173 (54.91%), Query Frame = 2
Query:  278 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 796
            ++E  +SR +   Y  D++     D    GAG +G+   Y L+K    ++AI E+ +S GGG W     F+ +VV++ A   LDE G+DY +  + + +  +    ST+ SK + +   K+FN V  EDL+VK GRV G+V NW  V M   T   +DP  +EAK VV S GH
Sbjct:    1 MREIEISRAIVEAYFNDLLQNLQLDIAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSVGGGIWGGAMGFNRVVVQESAREILDEFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFNMVEVEDLVVKDGRVSGLVINWTPVMM---TGLHVDPLTVEAKFVVDSTGH 168          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.533e-24
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 2
Query:  278 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 796
            ++E  ++R +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV+  A   LDE GI Y+E +    +  A    +TI SK++ +  VK+FN +  EDL++K  RV G+V NW  V M       +DP  +EAK V+ S GH
Sbjct:    2 LREVTITRAIVESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFNMIEVEDLVIKDNRVSGIVINWTPVLM---AGLHVDPLTIEAKYVIDSTGH 169          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.967e-20
Identity = 56/178 (31.46%), Postives = 97/178 (54.49%), Query Frame = 2
Query:  266 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 799
            K D IK   +SR +   YM D++ Y + D    G G +GL+  Y L++   +++A+ E+ +S GGG W  G +F+ +VV+      LDE GI  +  D    +  +   TST+ S+   +  +K+FN ++ ED++++   + G+V NW+ V M       +DP  + A+ V+ + GHD
Sbjct:    2 KLDDIK---ISRAIVEGYMEDLLDYMEMDVAIGGGGPSGLTAGYYLAR-AGLKVALFERKLSIGGGMWGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSR-ACQAGLKIFNLMSIEDVMIRDEGITGLVLNWSSVEM---AGLHVDPLTVRARAVIDATGHD 171          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.355e-20
Identity = 57/174 (32.76%), Postives = 98/174 (56.32%), Query Frame = 2
Query:  278 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWA-LVSMNHDTQSCMDPNVMEAKVVVSSCGH 796
            +++ ++SR +  RY   +    + D    GAG +GL+ AYEL+KN   ++A+ E+  +PGGG W  G +F+ +V+ K    FL E+ I+Y+ ++ ++V+  +  F S ++ +   +    +FN V+ ED+ V+ GRV GVV NW   V +       +DP  ++A  VV   GH
Sbjct:    3 MRDVLISRLIVERYFEKLRNSLELDVAIVGAGPSGLTAAYELAKN-GFRVAVFEERNTPGGGIWGGGMMFNEIVLEKELENFLKEVEIEYEVKEDHIVV-DSVHFASGLLYR-ATKAGAIVFNNVSVEDVAVQNGRVCGVVVNWGPTVRLGLH----VDPITVKASFVVDGTGH 169          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.710e-19
Identity = 58/180 (32.22%), Postives = 94/180 (52.22%), Query Frame = 2
Query:  269 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGI--DYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 799
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WL G L + + VR PA   LD+LG+  +YDE++  + +  A    S +++        ++ N     D++V+    V G V NW  V       +C+DP  +EA VVV + GHD
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMIT-AACDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHD 183          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.710e-19
Identity = 58/180 (32.22%), Postives = 94/180 (52.22%), Query Frame = 2
Query:  269 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGI--DYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 799
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WL G L + + VR PA   LD+LG+  +YDE++  + +  A    S +++        ++ N     D++V+    V G V NW  V       +C+DP  +EA VVV + GHD
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMIT-AACDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHD 183          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_HALMA (Putative thiazole biosynthetic enzyme OS=Haloarcula marismortui GN=rrnAC1782 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.140e-18
Identity = 56/183 (30.60%), Postives = 96/183 (52.46%), Query Frame = 2
Query:  266 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDY----DEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 799
            +F  + E+ V+R + + +  + + ++D+D    G G +GL  A EL++   +Q+ ++E++   GGG WL G L + + VR PA   LDEL +D+    D +  YV     A    + + K       K+ N     D++++   RVGG+V NW  V       +C+DP  +EA +V+ + GHD
Sbjct:    9 QFSDVGEAEVTRAIGQEWTEEFMDFSDSDVIIVGGGPSGLMAAKELAER-GVQVMVVEKNNYLGGGFWLGGFLMNKVTVRDPAQQVLDELEVDHKRSKDSEGLYVANGPEA---CSGLIKAACDAGAKMQNMTEFTDIVIREDHRVGGIVMNWTPVHALPREITCVDPIAVEADLVIDATGHD 187          
The following BLAST results are available for this feature:
BLAST of CB290668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
THI4_YEAST2.905e-5654.07Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRFU2.245e-2437.57Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB5.002e-2437.57Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO6.533e-2436.99Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRHO6.533e-2436.42Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_METTH1.967e-2031.46Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_THEMA3.355e-2032.76Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_HALSA3.710e-1932.22Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS33.710e-1932.22Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALMA3.140e-1830.60Putative thiazole biosynthetic enzyme OS=Haloarcul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290668 ID=CB290668; Name=CB290668; organism=Citrus sinensis; type=EST; length=812bp
GCACTGCTGCAAATCAAATTACTTCTCATTATCAAACTTCTAAGCAGCAG
GGGAAGGAGGGGTAAAAAAAAAAAACATGGCAGCCATGGCTTCTACAGCT
TTCGCTCCTTCAGTTTCGTCTACCACCAATAAGCTCTTTGACTCATCCTT
TCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCAAAT
CTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTTAT
GACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTCTCG
TGAAATGACGCGCAGGTACATGACGGACATGATCACTTATGCTGACACTG
ATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATGAG
CTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGTTAG
CCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCTTCTCTGCCATGGTTG
TGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTACGAT
GAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCAC
TATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAG
TGGCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTG
ACCAACTGGGCGTTGGTGTCAATGAATCACGATACACAGTCTTGCATGGA
TCCCAATGTAATGGAAGCGAAAGTGGTTGTGAGCTCTTGTGGCCATGATG
GGCCTTTTGGGG
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