CB290668

Overview
NameCB290668
Unique NameCB290668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_METMP (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis GN=MMP1352 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.776e-13
Identity = 57/178 (32.02%), Postives = 84/178 (47.19%), Query Frame = 2
Query:  284 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 799
            E  V++ + +      +   D D    GAG +GL+ A  L++N  ++  ++E+ +S GGG W  G  F  +VV KPA   L E GI  DE     VI    LFT+    + +KL         K+   +  EDLI+K  +V GVV     +         +DP  + AK V+ S GHD
Sbjct:    9 EVAVTKSILKSTFDMWMDLIDVDVVIVGAGPSGLTAAKYLAQN-GVKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADEILREAGIKLDE-----VIGEPELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKVSGVVIQSYSI---EKAGLHIDPITISAKYVIDSTGHD 177          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_METM7 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0597 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.156e-12
Identity = 55/178 (30.90%), Postives = 83/178 (46.63%), Query Frame = 2
Query:  284 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 799
            E  V++ + +      +   D D    GAG +GL+ A  L++N  ++  ++E+ +S GGG W  G  F  +VV KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD
Sbjct:    9 EVAVTKSILKSTFNMWMDIIDVDVVIIGAGPSGLTAAKYLAQN-GVKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADEILREAGIKLDEVDG-----EDELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAI---EKAGLHIDPLTISAKYVIDSTGHD 177          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_SULTO (Putative thiazole biosynthetic enzyme OS=Sulfolobus tokodaii GN=ST0361 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.737e-12
Identity = 50/185 (27.03%), Postives = 87/185 (47.03%), Query Frame = 2
Query:  251 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 799
            D N+ K   + E  +S+ + +    D     ++D    GAG +G++ AY L+K   ++  + E+ +S GGG      LF  +V+  PA   L E+ I  ++ +  V I  +A F + + +  +     K+ + V  +D+I +    +V GV   W    M       +DP  + AK VV + GHD
Sbjct:    2 DSNSIKVKQVDEVKISKYILKYTFQDWEDIVESDVVIVGAGPSGMTAAYYLAK-AGLKTVVFERRLSFGGGIGGGAMLFHKIVIESPADEILKEMKIKLNKVEEGVYIVDSAEFMAKLAASAIDA-GAKIIHGVTVDDVIFRENPLKVVGVAVEWTATQM---AGLHVDPLFISAKAVVDATGHD 181          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_METM5 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0226 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.737e-12
Identity = 54/178 (30.34%), Postives = 82/178 (46.07%), Query Frame = 2
Query:  284 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 799
            E  V++ + +      +   D D    GAG +GL+ A  L++   ++  ++E+ +S GGG W  G  F  +VV KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD
Sbjct:    9 EVAVTKSILKSTFNMWMDVIDVDVVIVGAGPSGLTAAKYLAQK-GVKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADEILREAGIKLDEVDG-----EDELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAI---EKAGLHIDPLTISAKYVIDSTGHD 177          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_METM6 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1321 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12
Identity = 54/178 (30.34%), Postives = 81/178 (45.51%), Query Frame = 2
Query:  284 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 799
            E  V++ + +      +   D D    GAG +GL+ A  L++    +  ++E+ +S GGG W  G  F  +VV KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD
Sbjct:    9 EVAVTKSILKSTFNMWMDIIDVDVVIVGAGPSGLTAAKYLAQK-GFKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADDILREAGIKLDEVDG-----EEELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAI---EKAGLHIDPLTISAKYVIDSTGHD 177          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_METJA (Putative thiazole biosynthetic enzyme OS=Methanocaldococcus jannaschii GN=MJ0601 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 48/153 (31.37%), Postives = 76/153 (49.67%), Query Frame = 2
Query:  344 DTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGID-YDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 799
            + D    GAG +GL+CA  L+K    ++ ++E+ ++ GGG W  G  F  +VV +PA   L E+GI   D  D Y V     +     ++ + A    K+   +  EDLI++   V GVV N   +         +DP  + +KVVV + GH+
Sbjct:   32 EADVVIVGAGPSGLTCARYLAKE-GFKVVVLERHLAFGGGTWGGGMGFPYIVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDA--GAKILTGIVVEDLILREDGVAGVVINSYAIER---AGLHIDPLTIRSKVVVDATGHE 178          
BLAST of CB290668 vs. ExPASy Swiss-Prot
Match: THI4_METS5 (Putative thiazole biosynthetic enzyme OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2221 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.180e-11
Identity = 53/187 (28.34%), Postives = 88/187 (47.06%), Query Frame = 2
Query:  254 LNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 799
            +N  + D IK   ++R + +    D + ++  D    GAG +GL+ AY  +K   ++  + E+ +S GGG      LF  +V+  PA   L E+G+   + +  V +    + +S  M+KL A       K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD
Sbjct:    1 MNIKQVDEIK---ITRYILKATFEDWMDFSVNDVVIVGAGPSGLAAAYYSAK-AGLKTTVFERRLSFGGGIGGGAMLFHKIVIESPADEILREIGVKLQKFEEGVYV----VDSSEFMAKLAAATIDAGAKIIHGVTVDDVIFRENPLRVTGVAVEWTATQM---ASLHVDPLFISAKAVVDATGHD 176          
The following BLAST results are available for this feature:
BLAST of CB290668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
THI4_METMP6.776e-1332.02Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM71.156e-1230.90Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_SULTO5.737e-1227.03Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METM55.737e-1230.34Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM69.785e-1230.34Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METJA1.278e-1131.37Putative thiazole biosynthetic enzyme OS=Methanoca... [more]
THI4_METS52.180e-1128.34Putative thiazole biosynthetic enzyme OS=Metallosp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290668 ID=CB290668; Name=CB290668; organism=Citrus sinensis; type=EST; length=812bp
GCACTGCTGCAAATCAAATTACTTCTCATTATCAAACTTCTAAGCAGCAG
GGGAAGGAGGGGTAAAAAAAAAAAACATGGCAGCCATGGCTTCTACAGCT
TTCGCTCCTTCAGTTTCGTCTACCACCAATAAGCTCTTTGACTCATCCTT
TCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCAAAT
CTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTTAT
GACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTCTCG
TGAAATGACGCGCAGGTACATGACGGACATGATCACTTATGCTGACACTG
ATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATGAG
CTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGTTAG
CCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCTTCTCTGCCATGGTTG
TGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTACGAT
GAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCAC
TATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAG
TGGCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTG
ACCAACTGGGCGTTGGTGTCAATGAATCACGATACACAGTCTTGCATGGA
TCCCAATGTAATGGAAGCGAAAGTGGTTGTGAGCTCTTGTGGCCATGATG
GGCCTTTTGGGG
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