CB290669

Overview
NameCB290669
Unique NameCB290669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:21..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.961e-30
Identity = 76/199 (38.19%), Postives = 109/199 (54.77%), Query Frame = 1
Query:  205 KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP-------LLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            K  Y+ +L   L +Y+ +L    DNV S Q+ ++ R LR  +  +MGK T+  + +   A+    +              LL GN GLIFT   +               ARVG ++P DV+V  G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G ++
Sbjct:    8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVGRALRAKAEFMMGKKTLQGKIVEKRAQAKDASPEAKHFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDAHRVKRAARVGAISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLF 206          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.454e-30
Identity = 76/202 (37.62%), Postives = 117/202 (57.92%), Query Frame = 1
Query:  175 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            M  K +K  K++ Y+ +  +L E Y++  +   +NV S QL++I+R   G++ +LMGKN+ ++R I       G      +  L++G+V  +F KG+              A A+VG VA  DV V    TG+ P +TS+FQ L I TKI KG VEII+P +++ +GDKVG S+A LL  L I+PF Y + +  +YE+G +Y
Sbjct:   25 MTRKDAKERKELTYE-RARKLFETYSRFALVKIENVVSTQLKDIKRQWGGNAELLMGKNSAIRRAIA----DLGKPELSGVYDLVKGDVCFVFFKGNARDIKKAIDENVREACAKVGNVAQRDVWVESCITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYKMTMHQIYEDGVIY 221          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.842e-21
Identity = 64/186 (34.41%), Postives = 94/186 (50.54%), Query Frame = 1
Query:  226 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            L +LL+    I +     V S QLQ IR  +R    + M +NT+MKR I   AE+TGN +F  LI  ++    LI T+ +              AP + G  AP D+ +  G+TG+ P    S  + + +P  I KG + I     + ++GD V +  A +L+KL I+P   GL V  VYE+G VY
Sbjct:   21 LKELLKSGNVIALIDMMEVPSVQLQEIRDTIRDSMTLKMSRNTLMKRAIEEVAEETGNPSFTKLIDCMEKGAALIATEMNPFKLYKTLNESKSPAPIKAGATAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPMEVGLNVLGVYEDGIVY 206          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METM5 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.354e-20
Identity = 59/186 (31.72%), Postives = 96/186 (51.61%), Query Frame = 1
Query:  226 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L+  +     +I T+ +              AP + G VAP D+ +  G+TG+ P    S  + + +P  I+KG + I     ++++G+ V    + +L+ LGI+P + GL V  VYE+G +Y
Sbjct:   21 LKELLKSSSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLVDYMDKGAAIIATEMNPFKLYKTLDESKSPAPVKGGAVAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIDKGKIGIKEDTVVVKEGEVVSQKLSVVLSALGIKPVTVGLNVLGVYEDGIIY 206          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METM6 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.993e-20
Identity = 63/186 (33.87%), Postives = 94/186 (50.54%), Query Frame = 1
Query:  226 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L   L     +I T+ +              AP + G  AP D+ V  G+TG+ P    S  + + IP  I+KG + I     +I++G+ V    A +L+ LGI+P + GL V  VYE+G +Y
Sbjct:   21 LKELLKSTSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLADYLDKGAAIIATEMNPFKLFKTLDESKSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVIKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIY 206          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_THESM (Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.133e-20
Identity = 63/199 (31.66%), Postives = 100/199 (50.25%), Query Frame = 1
Query:  187 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            A  AE K     +L +LL++Y  I +    +V +  L  +R  LR  +V+ + +NT+++  ++  A++  ++    LI  +QG  G++ TK +              APA+ G  AP DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L +LGI P   GL + + YE+G VY
Sbjct:    2 AHVAEWKKKEVEELTKLLQDYPVIALVDVADVPAYPLSKMRESLRDKAVLRVSRNTLIELALKKAAQELNDSNLEKLIEHIQGGTGILVTKINPFKLYKFLEESKKPAPAKAGAPAPRDVVVPAGPTPLSPGPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGEIITPQLANILNQLGIEPLEVGLKLLAAYEHGIVY 200          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METM7 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.133e-20
Identity = 62/186 (33.33%), Postives = 94/186 (50.54%), Query Frame = 1
Query:  226 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L   L     +I T+ +              AP + G  AP D+ V  G+TG+ P    S  + + IP  I+KG + I     ++++G+ V    A +L+ LGI+P + GL V  VYE+G +Y
Sbjct:   21 LKELLKSTSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLADYLDKGAAIIATEMNPFKLFKTLDESKSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVVKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIY 206          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METVS (Acidic ribosomal protein P0 homolog OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rplP0 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.558e-19
Identity = 59/186 (31.72%), Postives = 93/186 (50.00%), Query Frame = 1
Query:  226 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            L +LL+    I +     V + QLQ IR  +R    + M +NT++KR +   AE+TGN  F  L+  L     ++ T+ +              AP + G +AP D+ V  G+TG+ P    S  + + IP  I+KG + I     + ++GD +    A +L+ LGI+P + GL V  VYE G +Y
Sbjct:   21 LKELLKSANVIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLIKRAVEEVAEETGNPEFAKLVDYLDKGAAIVVTEMNPFKLFKTLEESKSPAPIKGGAIAPCDIEVKSGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVAKEGDVISPKLAVVLSALGIKPVTVGLNVLGVYEEGVIY 206          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_HALSA (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarium GN=rplP0 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.558e-19
Identity = 57/188 (30.32%), Postives = 97/188 (51.60%), Query Frame = 1
Query:  220 AKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            A+L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP G+TG+DP       Q +    +I +G+++++    +  +G+ V    + +L++LGI P   GL ++ V+  G ++
Sbjct:   21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEPKEVGLDLRGVFSEGVLF 203          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_HALS3 (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.558e-19
Identity = 57/188 (30.32%), Postives = 97/188 (51.60%), Query Frame = 1
Query:  220 AKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            A+L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP G+TG+DP       Q +    +I +G+++++    +  +G+ V    + +L++LGI P   GL ++ V+  G ++
Sbjct:   21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEPKEVGLDLRGVFSEGVLF 203          
The following BLAST results are available for this feature:
BLAST of CB290669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RLA0_LEIIN1.961e-3038.1960S acidic ribosomal protein P0 OS=Leishmania infa... [more]
RLA0_ENCCU7.454e-3037.6260S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_METVO4.842e-2134.41Acidic ribosomal protein P0 homolog (Fragment) OS=... [more]
RLA0_METM55.354e-2031.72Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METM66.993e-2033.87Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_THESM9.133e-2031.66Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_METM79.133e-2033.33Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METVS1.558e-1931.72Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_HALSA1.558e-1930.32Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_HALS31.558e-1930.32Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ch04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290669 ID=CB290669; Name=CB290669; organism=Citrus sinensis; type=EST; length=780bp
GCACTATGGTTTTTTCTTGTACACTTCTTTCACTCTCTTTGTATCTCGTT
GAGGTTAAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCAAGCCGCTG
CTTCGTCTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCACCAA
CAAAAGTAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGA
GAAGAAGATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACA
CCCAAATATTGGTGGCGGCCGCCGACAACGTGGGGTCCAATCAACTCCAG
AACATTCGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAA
CACTATGATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACA
CTGCCTTTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATT
TTCACAAAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAA
GGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTG
TTCCTCCCGGCAACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCCAG
GTGCTTAACATTCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCAC
ACCTGTGGAGCTTATTAGGAAGGGTGACAAGGTGGGATCTTCTGAGGCAG
CCCTGCTTGCAAAGCTTGGGATTAGACCCTTCTCTTATGGTCTTGTTGTC
CAGTCTGTCTATGAAAACGGTTCCGTCTAC
back to top